SRR1780626_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780626_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	45678
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	930	2.0359910679101536	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	428	0.9369937387801567	Illumina PCR Primer Index 10 (95% over 23bp)
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	122	0.2670870003064933	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	95	0.2079775822058759	No Hit
ATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTAGCGGATGATTCAGCC	94	0.20578834449844563	No Hit
CTTTACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	61	0.13354350015324665	Illumina PCR Primer Index 10 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTGATC	20	7.847472E-5	70.0	3
GATCCCC	25	2.3667129E-4	55.999996	30
TACTGAT	25	2.3667129E-4	55.999996	2
TGTGCAT	20	0.0069095623	52.5	12
TATCTCA	20	0.0069095623	52.5	46
CCTCATG	20	0.0069095623	52.5	45
GCCGTAC	20	0.0069095623	52.5	70
AAATGTC	20	0.0069095623	52.5	45
CAAAGCT	20	0.0069095623	52.5	66
GGGGCCA	20	0.0069095623	52.5	7
GTACTGA	30	5.8199494E-4	46.666664	1
CTCTATT	30	5.8199494E-4	46.666664	23
TTGAAAA	230	0.0	42.608696	58
TCTCGTA	240	0.0	42.291664	38
CTCGTAT	250	0.0	42.0	39
TCGTATG	255	0.0	41.17647	40
CTTGAAA	240	0.0	40.833332	57
ATCTCGT	250	0.0	40.6	37
CGTATGC	250	0.0	40.6	41
TGAAAAA	250	0.0	40.6	59