FastQCFastQC Report
Wed 25 May 2016
SRR1780622_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1780622_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26708
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATAGGC150.002202515769.988772
GCCAACC150.002202515769.9887712
CCATTCT200.006882636352.49157320
TGGGTGG200.006882636352.49157364
GTTGGGT200.006882636352.49157362
GGGTGGT200.006882636352.49157365
ATAGGCT450.004237564331.1061153
CGACGAC1600.00880459113.12289370
CCGACGA2050.003205769511.94930269
GCCGACG2407.7316415E-411.66479568
Produced by FastQC (version 0.11.5)