FastQCFastQC Report
Wed 25 May 2016
SRR1780619_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1780619_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences146
Sequences flagged as poor quality0
Sequence length50
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCTGAGGGGCCACAGTAATTACAAACTTACTATCCGCCATCCCATACA10.684931506849315No Hit
CCGTGCAAAGGTAGCATAATCACTTGTTCCTTAAATAGGGACCTGTATGA10.684931506849315No Hit
AGTCTTTTATGTGGCAAGTTGAGCCTTTTACAAAGCAGAGGAGTCTTAGC10.684931506849315No Hit
TCATGGTTGGCATGAGATTCGCCGGTGCTAATTTCGGGTCCTCTGCCATA10.684931506849315No Hit
ATTTAGCAGTAAACTGAGAGTAGAGTGCTTAGTTGAACAGGGCCCTGAAG10.684931506849315No Hit
TTAGGGAGTCATAAGTGGAGTCCGTAAAGAGGTATCTTTACTATAAAAGC10.684931506849315No Hit
GTCAGGGCCTGCTCGGCCTGGCGCGCGGACGGCGGGGCCGCCGTGGCGAC10.684931506849315No Hit
GATCGGCGTGCTCATGCCGATCGTGCTCGCCTACATCTGGCTCTCCTGGA10.684931506849315No Hit
CTATTAGAAGGATTATGGATGCGGTTGCTTGCGTGAGGAAATACTTGATG10.684931506849315No Hit
GCCGGGGACGCGGCCGGCACGGGTGCCACGATCCGCGCGGCCGCGCCGAT10.684931506849315No Hit
AATGTGCTATGTACGGTAGATGGCTTTATGTACTATGTACTGTTAAAGAT10.684931506849315No Hit
CTCCATGATGGCCGTAGTTCCCTGGTGCGGAAGGGCAGGCTATTACGCGG10.684931506849315No Hit
TTCGACATGGGCTTTAGGGAGTCATAAGTGGAGTCCGTAAAGAGGTATCT10.684931506849315No Hit
CAGCTGAACCCTCGTGGAGCCATTCATACAGGTCCCTATCTGTCTCTTAT10.684931506849315No Hit
CTCAATCTTATCCATCATAGCAGGCAGTTGATGTGGATTAAACCAAACCC10.684931506849315No Hit
GTGGACGGGCCCGCAGCGCCGCGAGCCCGTCCACCTGTCCCCGGTGCGCC10.684931506849315No Hit
CTCACGCACGTGCGCGGAGGCGCCGGTGATCTCGGCGCCCCGTCCGGCGC10.684931506849315No Hit
GGCCAGGACGAAGCGGTCCACGAGCCGGCGCAACGGAGAGGTGGCGTGGG10.684931506849315No Hit
GTCCAAAAAGGCCTTCGATACGGGATAATCCTATTTATTACCTCAGAAGT10.684931506849315No Hit
CCGTCTATTACTGCACAGATATGTATTTTGCGGGATGTGGCTCGTTCTGT10.684931506849315No Hit
GTTCGATTCTCATAGTCCTAGAAATAAGGGGGTTTAAGCTCCTATTATTT10.684931506849315No Hit
CTCCTATTGATAGGACATAGTGGAAGTGAGCTACAACGTAGTACGTGTCG10.684931506849315No Hit
CCCTATTGTTGATATGGACTCTAGAATAGGATTGCGCTGTTATCCCTAGG10.684931506849315No Hit
GACCTCTAGCCAGACTAATAAAGAAGAAAAGAGAGAAGAATAAAATAGAC10.684931506849315No Hit
CATTCATACAGGTCCCTATTTAAGGAACAAGTGATTATGCTACCTTTGCA10.684931506849315No Hit
GTTTAGCTCAGCGCGGTCAAGTTAAGGTGAAATCTCCTAAGTGTAAGTTG10.684931506849315No Hit
GTAGGAGAGAGGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGGGA10.684931506849315No Hit
GATCGAGACCGCGGCGCGGCGGGAGCTCGGCCCGCGGGCGGTCGGCCTGA10.684931506849315No Hit
GATCACAGGGCCCAGCAGAGGAGCCTGGCTGAGCTAGCTTCCCTTGATAC10.684931506849315No Hit
GATGTAAGTCCGTGGGCGATTATGAGAATGACTGCGCCGGTGAAGCTTCA10.684931506849315No Hit
CCGTCACGGCGGGGGGGGGGCCGCCTGCTCGCTCTCCGGGCCCAGTTGTG10.684931506849315No Hit
GCCATACACTACTCACCAGACGCCTCAACCGCCTTTTCATCAATCGCCCA10.684931506849315No Hit
CGGCCCACACGCCCCAGGAGCTCGGCCACCTGATCCACGAGGCGGACGCC10.684931506849315No Hit
ATACACATATGACGCTGCCGACGAGCTACTAGGTCTCGAACTCCGTGTGC10.684931506849315No Hit
CACCCACTCCCTCTTAGCCAATATTGTGCCTATTGCCATACTAGTCTTTG10.684931506849315No Hit
NTCCAGCATCCCTCCGGCCTGCCNNTGGCGCACTGGCTCCTGTCTCTTAT10.684931506849315No Hit
GTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCTGTCTCTTATACA10.684931506849315No Hit
CATCTGAATTCAGGATAACTATGCCATGAGATACTACCATGGTGTGTTCA10.684931506849315No Hit
AACCTGGACCTGCCGATCAACGACGTCGAGCAGTGCCTGCGGATCGCCGT10.684931506849315No Hit
TTGCTACATAGACGGGTGTGCTCTTTTAGCTGTTCTTAGGTAGCTCGTCT10.684931506849315No Hit
CTATCCCCGACTCCAGCTCCCGCCTAGGCACTACGACCTCGCTGTTGGAT10.684931506849315No Hit
CTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCATAT10.684931506849315No Hit
GCAGCACCCACTGCGGCCGCGTGTGGCCGAACGGCACGCCCACGCCTGTC10.684931506849315No Hit
CTAGATAGGGCCACGACAGTGTGAGCACATGAAAGATTACCAGGAAGAGG10.684931506849315No Hit
AAGGTAGCATAATTACTTGTTCCTTTAATAGGGACATGTATGAATGCTGT10.684931506849315No Hit
GGGTGGTGCGGGGGGTGGGGTCCGTCAGAGTCACCGCACCATTCTAGGAA10.684931506849315No Hit
GTATTGAGCCTGCAAGTGCACAGAAGTAAAGAACTGGGGTTTGGGAACTT10.684931506849315No Hit
GGGTATAACCAACATTTTCGGGGTATGGGCCCGATAGCTTATTTAGCTGA10.684931506849315No Hit
ACTACAACCCTTCGCTGACGCCATAAAACTCTTCACCAAAGAGCCCCTAA10.684931506849315No Hit
CCGTGCTCAACGCCGCCCTCGCGGCCCCTAAAGCTCGCCCAGGCCTCGCC10.684931506849315No Hit
AGCACGGCGAGCCCGGCCACGTAGTGCACGCCGAGGGCCAGCAGCCACGC10.684931506849315No Hit
CTTGCGGGAAGGTGATGGGGACCTGGCAGCTGTCTCTTATACACATCTGA10.684931506849315No Hit
ACCTCGAGGCCGGCGCCGGTGAGGGCGTTGTCGGCGACGAGGGCGCCGTG10.684931506849315No Hit
CTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATCACC10.684931506849315No Hit
GAGGACGACGCTGCGGCGCGCGAGCTCTGCGCGGCCTGTCTCTTATACAC10.684931506849315No Hit
CTCACCCACTAGGATACCAACAAACCTACCCATCTTTAACAGTACAAAGT10.684931506849315No Hit
GGTGGAGACCTAATTGGGCTGATTTGCCTGCTGCTGCTAGGAGGAGGCCT10.684931506849315No Hit
TCGGCGGGGCGCCCCCCTTTCGTCGTGTCCGGCCTCGCGTCGAGTCGGAT10.684931506849315No Hit
GACAAGGCCGGTGGCTGCCGGGGCTTCATGGTCACGGGGGGCGAGGTCGA10.684931506849315No Hit
TCCCTCACCTTCTGTGCTCCTTGTTTCTGTATATAGTATTGAATAAAGAA10.684931506849315No Hit
GTCTTGGCCCCGTCGATCGCCGGCCCATCGCCGAAGTCGTACTGCAGCCA10.684931506849315No Hit
GCAGCAGGCCGATGCCCACGGTCTGCAGCACGGTCTTGAGCCTGTCTCTT10.684931506849315No Hit
CGTAAGGGGTGGATTTTTCTATGTAGCCGTTGAGTTGTGGTAGCTGTCTC10.684931506849315No Hit
GCTTCACGCGCGCCACCACGCGGGAGCCCTGCTGGACGGTCCCGTCCAGG10.684931506849315No Hit
GATCTACCGTGACGAGACCGCGGAGATGGAGGGAGTCAAGGGCATCCGCT10.684931506849315No Hit
ATCCTTACCACCCTCGTTAACCCTAACAAAAAAAACTCATACCCCCATTA10.684931506849315No Hit
GGTCACGCGACGATCGGCGGCGAGGAGCGGCTCATCACCCTGCGGACGGT10.684931506849315No Hit
GGCTTAGAAGAAAACCCCACAAACCCCATTACTAAACCTGTCTCTTATAC10.684931506849315No Hit
GTGCTACTCTCCTCGCTCCGGGCCCATAACACTTGGGGGTAGCTAAAGTG10.684931506849315No Hit
GCCCCCTGCAGCGCGAGGCGCGCCCTGCCCCAGGCCCTGTCTCTTATACA10.684931506849315No Hit
TCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACCGAA10.684931506849315No Hit
GCTCCCACTGCTCCCGGGTGCGCCCCGCGCCGGTCAGCGGCAGGTCGAGC10.684931506849315No Hit
GCCGGGCGGGGTCCTGGGCGATCACGTCGAGGCCCTGGGTGCCGATCGAG10.684931506849315No Hit
GGTTATGGGTGCCAGGCCTTTAGACCCCACATAGACCAGTAAATTGATGC10.684931506849315No Hit
CTTCACGGCCACGCGCGGCCCCCCGGGCAGGCGGGCCGGGGGAACGTCTT10.684931506849315No Hit
CGATGGGGTGGCGCCAGTGGCACAGCAGCAGCTCTGTCTCTTATACACAT10.684931506849315No Hit
GTCCCCCATAGAGTGAGAACGAATACCCCCATAGCACTACACTAAAAAAC10.684931506849315No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGATTGGTACGGTGTAGATC10.684931506849315No Hit
GTAATAGGGCAAGGACGCCTCCTAGCTTGTTAGGGACGGATCGGAGAATT10.684931506849315No Hit
ATGCTGGGGTGGCGGTTGCGGCAAACTTTAATAGGGTAGGAAGCTGAATA10.684931506849315No Hit
CCTTGACGTTGACAATCGAGTAGTACTCCCGATTGAAGCCCCCATTCGTA10.684931506849315No Hit
GCACGGCGGTGCCCACGTTGAAGTTCATTGACGTGGTGTAGCTGGGGCCT10.684931506849315No Hit
ACACACATCTGACGCTGGCGACGCAACTTTGTGTGTAGACCTCCGCTGGC10.684931506849315No Hit
CTGCCGGACCTCGACCGCATCCTCGACGGCCTGGACCTGTCTCTTATACA10.684931506849315No Hit
GCACAAACACTGTCTCTTATACACATCTGACGCTGCCGACGATTGGTACG10.684931506849315No Hit
CTCCCCCCAACCCCCCCCCCCCCACGACCCCCCACACCCCCTCCCTCCCC10.684931506849315No Hit
TGTCCATCGTGGTGCTCGCCGACGTCCTCATCCGCCGCCGCGACCTCGGC10.684931506849315No Hit
ATCCTAGTCCTCATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGA10.684931506849315No Hit
GAGTAAGCTGCTGGTTTCGATAGTAACTAGTATGGGGCTAAGGGGTGTCG10.684931506849315No Hit
CTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCT10.684931506849315No Hit
CGATTAGAGGCAGGGTCGTTGGTTGGAGGGGTCATGGTAGGGGGGACAGG10.684931506849315No Hit
CGTCAGGGCCACCACGAGCAGCACCGGCGCGACGTAGCCGAACACGGCCG10.684931506849315No Hit
GCCCCGGTCGCGGCGGCTGTCCTCCACCAGCTCGGCGTCCTCGAAGAACC10.684931506849315No Hit
GTTATGTCCTACACGCATTAATTAATTAACACACTTTCGTAAGTCTGTTC10.684931506849315No Hit
AACTTACACTTAGGAGATTTCAACTTAACTTGACCGCTCTGAGCTAAACC10.684931506849315No Hit
GGCCGCGGGCCGCGCCGAGCTCGAGCAGGCCCGGGACGCCGCACTGGCCG10.684931506849315No Hit
GTTTTGGTTAAACTATATTTACAAGAGGAAAACCCGGTAATGATGTCGGG10.684931506849315No Hit
CTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAG10.684931506849315No Hit
AGATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATAC10.684931506849315No Hit
GCCGGGACGTCCGCCGCGGGCGTCTGCTCGTCCAGGGTGACGCCTGTCTC10.684931506849315No Hit
CTCCATCGCCCGCCTTCGCGGGCTGGTCGAGGCCGAAAGCTCCTGCTGCT10.684931506849315No Hit
ATTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTGCACTC10.684931506849315No Hit
GGGGGAGAGAGAGGGGGGGGGGGTGGGGGGTGAGGAGCTGTCGGGGCGCG10.684931506849315No Hit
GTGCTGGAGTTTAAGTTGAGTAGTAGGAATGCGGTAGTAGTTAGGATAAT10.684931506849315No Hit
CTGCTAGGAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACAC10.684931506849315No Hit
ATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTCTAT10.684931506849315No Hit
AGGGAGAGCAGGGCCATCGCCTGCCACCCGGCCAGTACCCATCCCGGGCC10.684931506849315No Hit
CATGGGCACCACGGTAGGGAGCGGGCCGCGGCGCGGGCGCTGTCTCTTAT10.684931506849315No Hit
GTCTAGGCCATATGTGTTGGAGATTGAGACTAGTAGGGCTAGGCCCACCG10.684931506849315No Hit
CAACAGGGTGCCTGGCACAAGGAGATACTCAGTAAAACTCTCATCTGCTG10.684931506849315No Hit
GTCCAACAGGCGCTCGAACTGGGCGTGCACGGCCGGCCCTGTCTCTTATA10.684931506849315No Hit
GCCTAGAAGGAATAATACTATCGCTGTTCATTATAGCTACTCTCATAACC10.684931506849315No Hit
CCTCCGGCCGGCTTACCACGTTCCGCATGCCCAGCGGCCCGGGCGTGCGC10.684931506849315No Hit
GGGGCATTTGGTAGATATGATTATCATAATTTAATGAGTCGAAATCATTC10.684931506849315No Hit
GCCTACGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGC10.684931506849315No Hit
TCTTATACACATCTGACGCTGCCGACGAATCTGGCGGTGTAGATCTCGGG10.684931506849315No Hit
GGGTGATGGTGGCTATGATGGGGGGGATGATGAGGCTATTGTTTTTTGTG10.684931506849315No Hit
GTCAACTGGGACGCCGCCCAGCTGGACGGCAAGCCGAGGAAGATCGAGAA10.684931506849315No Hit
GCGCTGATGGGCGCCTACACCGAGCTCACCGCCGCAGGCGTGACCACCCG10.684931506849315No Hit
CAAACAACCCCATCAAAAAGTGGGCAAAGGACATGAACAGACACTTCTCA10.684931506849315No Hit
CACCTTGACCTAACGTCTTTACGTGGGTACTTGCGCTTACTTTGTAGCCT10.684931506849315No Hit
CGTATGTAGTCAAGAACACCAGAGGTGAGAGCAAAAAATTTTATTTATAT10.684931506849315No Hit
ATTCGACAATGCAGGCATTTCCAATCACCAAATCACAAAGGCAATATGCT10.684931506849315No Hit
GGCTGTCACCGCCGGTGCGGACTTCCACCGCATCTCGGAGCACGTTGCCT10.684931506849315No Hit
GCGCGGCACCGTGCCGCTGGCCCCGCAGGAGCAGCAGCCTGTCTCTTATA10.684931506849315No Hit
CTGGCTTATCTGTCTTTGGGAAGAATGATTTCCCACCATCTTCCTGGTCG10.684931506849315No Hit
GGGTAATAATGACTTGTTGGTTGATTGTAGATATTGGGCTGTTAATTGTC10.684931506849315No Hit
AGCTAAGCCCTTACTTGCCCAATGCGGCTTAACCGCACAAACACTTAGTT10.684931506849315No Hit
CTCTCAATCTTATCCATCATAGCAGGCAGTTGAGGTGGATTAAACCCTGT10.684931506849315No Hit
AGCTTACACAATAGCTTTTATAGTAAAGATACCTCTTTACGGACTCCACT10.684931506849315No Hit
ATTCCCTGGTTCCTAGCAGCCATCCAAGCTGGACTGAACCGAATACCTCC10.684931506849315No Hit
GTGTCAGATGCTCTCCTGAGGAATCAAACACTGCAAAAGAGTTTCCTGGG10.684931506849315No Hit
GGGCGTGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCTGTCTC10.684931506849315No Hit
ACAAGGATGTGGCCCATCTGTTTGGCTGCCAGGTGCTCAAACCCCTTATG10.684931506849315No Hit
CCCAAACATTAATCAGTTCTTCAAATATCTACTCATCTTCCTAATTACCA10.684931506849315No Hit
CTAGACATAGTACTTCCCGACCCGTACTACGTTGTAGCTCACTTCCACTC10.684931506849315No Hit
GAGTGGTTAATAGGGTGATAGACCTGTGATCCATCGTGATGTCTTATTTA10.684931506849315No Hit
CAACACCCACTACCTAAAAAATGCCAAACATATAACTGAAGTCGGCTCAC10.684931506849315No Hit
GCGTGTACCACCACGAGATCCCGGGCGGCCGGCGGTCCAACCTCCGCACG10.684931506849315No Hit
CCCAGTGCCCGCGCACGACCTCTTCGTAGTCGGTGGTCCACAGGCCGTCG10.684931506849315No Hit
GCTTAGCGCTGTGATGAGTGTGCCTGCAAAGATGGTAGAGTAGATGACGG10.684931506849315No Hit
ACCTCACCCCCACTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCA10.684931506849315No Hit
CTCGTGGCCGCCGCGGGAGCGGCCGGCCTCGCCGCCGCCGGCTGGCTGAC10.684931506849315No Hit
TCCCTGTTCTTATGAATTCGAACAGCATACCCCCGATTCCGCTACGACCA10.684931506849315No Hit
CCGCGGAACTGGCCGAGCTCCTGGCCACGGCACGCGAGCTGTCTCTTATA10.684931506849315No Hit
TTATACCTGTCTGAAATATTTCATCAAGTCTTTCTGCCACCTTCTGTGGG10.684931506849315No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)