SRR1780616_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780616_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	63495
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	1037	1.6331994645247656	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	446	0.7024175131900149	TruSeq Adapter, Index 2 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	172	0.27088747145444525	No Hit
ATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTAGCGGATGATTCAGCC	111	0.1748169147176943	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	84	0.13229388140798487	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGAG	20	0.0069219554	52.5	15
TTGGCGT	20	0.0069219554	52.5	23
ACATTAT	20	0.0069219554	52.5	12
AGCTATG	20	0.0069219554	52.5	12
CACTTCC	20	0.0069219554	52.5	17
AGGACGG	35	0.001246825	40.0	10
GATCAGA	35	0.001246825	40.0	16
GACGAAG	35	0.001246825	40.0	21
CGAAGAG	35	0.001246825	40.0	23
ACGAAGA	35	0.001246825	40.0	22
GGGCGTT	40	0.0024023054	35.0	30
TTAAAGC	40	0.0024023054	35.0	45
TAGGACG	40	0.0024023054	35.0	9
CGTTTGG	40	0.0024023054	35.0	33
TCTCGTA	285	0.0	33.157894	38
ATCTCGT	295	0.0	32.033897	37
CTTCACC	55	2.9619178E-4	31.81818	9
CGTATGC	325	0.0	31.230768	41
CGGATCA	45	0.0042781457	31.111113	14
ACTACGT	45	0.0042781457	31.111113	3