SRR1780591_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780591_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	50836
Sequences flagged as poor quality	0
Sequence length	50
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGCCGACGAGAATGATCGTGTAGATC	85	0.16720434337870801	No Hit
CTTATACACATCTGACGCTGCCGACGAGACCCAATGTGTAGATCTCGGTG	60	0.11802659532614683	No Hit
GCGTCAGATGTGTATAAGCTGTCTCTTATACACATCTGACGCTGCCGACG	57	0.1121252655598395	No Hit
ATACACATCTGACGCTGCCGACGAGACCCAATGTGTAGATCTCGGTGGTC	56	0.11015815563773704	No Hit
GATGCTGTCTCTTATACACATCTGACGCTGCCGACGAGAATGATCGTGTA	53	0.10425682587142969	No Hit
CTTATACACATCTGACGCTGTCTCTTATACACATCTGACGCTGCCGACGA	51	0.1003226060272248	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTTACA	40	4.0209488E-7	38.500862	1
GACCTAA	25	0.0023201276	35.23554	23
GGTGGTC	25	0.0023540978	35.131496	44
AAAATGA	25	0.0023540978	35.131496	32
TTTTATA	25	0.0023540978	35.131496	42
CCTCTGA	25	0.0023540978	35.131496	6
CCCGAGG	25	0.0023540978	35.131496	3
TTTACAC	45	1.0270142E-6	34.15562	2
AGGTGAC	35	3.1561352E-4	31.460299	35
CGCTGTC	30	0.005638515	29.391964	17
GAGGATG	30	0.0056658513	29.362947	22
ATTATTG	30	0.0056658513	29.362947	40
TCTCGGG	30	0.005748488	29.276247	43
TCCACAT	30	0.005748488	29.276247	2
GTGTAAA	30	0.005748488	29.276247	30
CAAGCTT	30	0.005748488	29.276247	6
CCAAGAG	30	0.005748488	29.276247	2
AGAGGGC	30	0.005748488	29.276247	5
GCAGTGT	55	4.9133323E-6	27.945509	30
ACGAAGT	65	5.5481905E-7	27.184769	21