SRR1780579_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780579_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	200941
Sequences flagged as poor quality	0
Sequence length	50
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	9259	4.607820205931095	No Hit
ATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTCTT	4348	2.1638192305204016	TruSeq Adapter, Index 2 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	1339	0.6663647538332147	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCG	937	0.4663060301282466	No Hit
ATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTAGCGGATGATTCAGCC	597	0.29710213445737804	No Hit
CTTTACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTC	501	0.24932691685619163	No Hit
TATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTCT	368	0.18313833413788125	No Hit
CTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTC	246	0.1224239951030402	No Hit
CTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTACC	231	0.11495911735285483	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGATT	20	7.8446727E-4	43.99577	41
GCACCGA	20	7.8446727E-4	43.99577	39
CACCGAT	20	7.8446727E-4	43.99577	40
ATTTACT	35	7.26504E-6	37.71066	7
GACATAT	35	7.26504E-6	37.71066	37
CCGTCTT	475	0.0	37.049072	44
GTCCCCT	25	0.0023349358	35.240467	1
TTACCAG	25	0.0023463813	35.205376	16
GGGCACC	25	0.0023492496	35.196613	37
CGGAGTA	25	0.0023492496	35.196613	32
AGCGGAT	95	0.0	34.7335	35
CATGGAT	45	1.0302756E-6	34.227448	3
GCCGTCT	520	0.0	33.8429	43
ATGATTC	100	0.0	32.996826	40
GAAGGTA	100	0.0	32.996826	29
GGTAGCG	100	0.0	32.996826	32
ATTGGCG	110	0.0	31.996925	21
AAAACGT	35	3.2055174E-4	31.433374	14
AAACGTA	35	3.2055174E-4	31.433374	15
TTGCAGG	35	3.2055174E-4	31.433374	4