FastQCFastQC Report
Wed 25 May 2016
SRR1780567_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1780567_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119
Sequences flagged as poor quality0
Sequence length50
%GC62

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGAGAGGGCGCTTCTGCCCACGGAGACCGAAAACCCTGTCTCTTATAC10.8403361344537815No Hit
CATCTGACGCTGCCGACGATTGGTACGGTGTAGATCTCGGGGGGTGCCGT10.8403361344537815No Hit
TGTAAATATAGTTTAACCAAAACATCAGATTGTGAATCTGACAACAGAGG10.8403361344537815No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC10.8403361344537815No Hit
ACCCTGCCGAGCGCCTGAATCGGGAGATCCGGCGCCGCACGGACGCGGTG10.8403361344537815No Hit
CGCGGGGCCCCTGGGAAGCAAGGGGGGGGCCTGAAGAGGATCCGGACGGA10.8403361344537815No Hit
ATTATTTCCTGTGCATGATCTAAAAACCCACTTGTGGTGTCTGGGACAAG10.8403361344537815No Hit
GGCGGGATTCTGTTAGGGGGCGCGGGCCCTCGGAGAGGGAGGCTTGGGTT10.8403361344537815No Hit
GCGGCCAGCTGCTCGGCCCGGGCGTCGAGCTCGGCCTGCCCCTGTCTCTT10.8403361344537815No Hit
GCCCCCCGCCGCCCGGGCGGCCGGGGGCCGCGCCGCGGCGCTGGGCGGCG10.8403361344537815No Hit
CGTGGCCCCCGCCGCGAGCGAGGGCACCGCCTCGGCGCCTGTCTCTTATA10.8403361344537815No Hit
GGATTCAAGTGCAACCCAACACGTCCCTAGCTATGATCGCTAAGAGGGAA10.8403361344537815No Hit
CCGGGGGAAGTCGGACGAGACGGCATGCGATCCAGGGCAGGCGGCGGCGC10.8403361344537815No Hit
CCCCTATCGTGGGTCGCATGCGACACGCGAAGATCATCGCCACCTTTGGG10.8403361344537815No Hit
GATGTAGAGGGTGCCGAGGTCGTCGCCGCCGAAGGTGCACGCCGTCGTCT10.8403361344537815No Hit
TGCTGGTAATCTCTTTTCACATACTTGGATTGTATAAAAGACCTGAAAGT10.8403361344537815No Hit
GGGCGAGCCGAGGGTGCGGCCGTGGCGGGCGCCGCCGAGGGTCGTCACCC10.8403361344537815No Hit
CATATAACCTCCCCCAAAATTCAGAATAATAACACACCCGACCACACCTG10.8403361344537815No Hit
ATACCTTTCCTCACCGGTTTCTACTCGACCGAGCACATCATCGAATCCGC10.8403361344537815No Hit
TGACGCAGGTCGCCTTGGGGGGGTGAGGTGCTGGGGCGGAGTTGGTGTTG10.8403361344537815No Hit
CGCGTCGAAGGCGCCTCCCAGCCGGGGCTCAGTCGCTGTCTCTTATACAC10.8403361344537815No Hit
GCCGATCACGGTGGTGATGGACGGGACCTCGGGCCTGCCTCTTTAACACA10.8403361344537815No Hit
ATGTAGGAATAGCCCCCTTTCACTTCTGAGTCACAGGGGTTACCCCGGGC10.8403361344537815No Hit
GTGCTGGTCGCCACCGCCGGCGAAACATCCCACCCGCAGTCGCCCACGCA10.8403361344537815No Hit
GATCCTCACCGAGTCGCACCTGCTGCCGGGCTCGATGGTCAAGAACGACC10.8403361344537815No Hit
GGACATGCTCCTCACCGGCTTCGACGCCCCGGCCCTGCACACCCTCTATG10.8403361344537815No Hit
CGATCAGCTCGGGGTTCAGCGCGAGCGCCCGGGCGATCGCCACGCGCTGT10.8403361344537815No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGATCCGTGCCGTGTAAATC10.8403361344537815No Hit
ATTCCAGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGGACAAGCAT10.8403361344537815No Hit
AGGTCACACTGCCAGTGGGTGGCAGCGTCCTTCTGAGTGAGCACTGTCTC10.8403361344537815No Hit
AGGGAGAGGAGGGTGGATGGAATTAAGGGTGTTAGTCATGTTCTGTCTCT10.8403361344537815No Hit
CATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTA10.8403361344537815No Hit
CCTCGAGGGCGTGATGGACGCCCGCGCCTGTCTCTTATACACATCTGACG10.8403361344537815No Hit
ATTTTTAGTAGAGATGGGGTTTCACCATGTTGGTTGGCCAGAATGGTCTC10.8403361344537815No Hit
CTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAGCTAAGCCCTT10.8403361344537815No Hit
CGATCCACCACGGGCACCTCGTGGCCGCCTCCGAGGCTGTCTCTTATACA10.8403361344537815No Hit
CGAACGCCGGCTGAAGGCACCGCTCCTTCCTGGGGGCGAGACGCTTATTC10.8403361344537815No Hit
CGCACAGAGCAACAACGCCCCGACGCCACACCCCCCCTCACCTACCCACG10.8403361344537815No Hit
ATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATATAGCA10.8403361344537815No Hit
GTACAAGGACGTGGTGCTGGGCCTGGTGTTCCTGAAGTACTGTCTCTTAT10.8403361344537815No Hit
GTCGTAGAGCGCGGCGTCGACCTTCGTGACGCCCGCGGCGGCCATGGCCC10.8403361344537815No Hit
CACGAGGAAATCGACGGTGCCCGCTTTTACGTACCCCATCTCCCAGCCTC10.8403361344537815No Hit
GTGGACAGGAAGTCGGGAATGGTGACACACACCTGTAGTCACAGCTACTA10.8403361344537815No Hit
CGTTCAGGGTGGGGCCGCTGATCTGCGCGCTGCCGTTGGTGATGACCACG10.8403361344537815No Hit
ATAAACATCTGACCCAGGCGACGGAACAGGGCGGGTTACTCGTTGGGGGC10.8403361344537815No Hit
GGGATGCGTGGCGTGGCGGTATTGCCGTTGACCGTCGGCCGCCTGGGGCA10.8403361344537815No Hit
TTCAAACTGTCATTTTATTTTTACGTTGTTAGATATGGGGAGTAGTGTGA10.8403361344537815No Hit
GGGCGACAACGGGGACCAGGATGAAGGCGGGGCGCCCAGGCCCTGTCTCT10.8403361344537815No Hit
GAATATGATAGTGAAATGGATTTTGGCGTAGGTTTGGTCTAGGGTGTAGC10.8403361344537815No Hit
ATGAGACTCATGGGTCGCTCCGGACGGGGTCGAGGGTCTGTCTCTTATAC10.8403361344537815No Hit
CAATCTGGCAGCATAAAGGATAGGGGGGAGAAAGTCTACCCTGGCGTATT10.8403361344537815No Hit
GATGAAAAGGTTGCATGAGTCATGAGGAGCTTATCTAGAGCTGTCTCTTA10.8403361344537815No Hit
TGTCACGAGCGCCGTCTCGGTGCCCGCCGCCGCGGGGCTGTCTCTTATAC10.8403361344537815No Hit
CCGCCCAGAGGGGGAGGATTAGGGGGCCGATCGGTGATATGCAAAGAGAA10.8403361344537815No Hit
CTACACATCTGACGCTGGCCACGAATGCCCATGGGGAGCACCCGGCGGGG10.8403361344537815No Hit
ACCCTGGACCACGCCTTTTTCAAGTCTAGCTTTCTATGGGCGGCCCCGCC10.8403361344537815No Hit
GACTGGCTCTAGGCGGGCGGCGCGCGGGGCAGTCCGAGGCTCAGTCGAGG10.8403361344537815No Hit
GGTAAGTGTACTGGAAAGTGCACTTGGACGAACCAGAGTGTAGCTTAACA10.8403361344537815No Hit
CGGCCCGCTCCACCGTCGTGCTGCGGCAGGCGCCCCGGGGCGCCACAACG10.8403361344537815No Hit
AATACACGTTCCGCCCATTCTAACCAGTCACCACCCACCGCCCCTAACCC10.8403361344537815No Hit
TCCTAAAATCCTTCTGGGCCACCAGAACCCAGTCTGAAACTCTAATCCTG10.8403361344537815No Hit
AGGTTAGAATGAGGAGGTCTGCGGCTAGGAGTCAATAAAGTGATTGGCTT10.8403361344537815No Hit
CTCGGGCAGGGATCCGGTGCTGACCTGCAACGGGGTGCTCTCGCCCGGCA10.8403361344537815No Hit
TGACGCAGGAGACCCGCCACTGGCACGAGGACACCCGCAGCACCTGTCTC10.8403361344537815No Hit
CACCGGGACCACCGGCCACGCCGAAGCGGTCCGCGTGCGCTTCGACGCCG10.8403361344537815No Hit
GACAGAAGATTAGGGTGGGGTGGGGCAGGGGCGATTAATCTGTCTCTTAT10.8403361344537815No Hit
GTGGACAAGTACCGCGACGACGAGATCGTGCTGATGGTCACCGGCTCCCA10.8403361344537815No Hit
GCGCTCGCCCACGCGGTGGCGGGCCGGCTCGAGGGGCTGTCTCTTATACA10.8403361344537815No Hit
CTCTTATACACATCTGACGCTGCCGACGAACTTCTAGGTGTAGATCTCGG10.8403361344537815No Hit
ACGTCCACGGGCACGATCGGGCGCTCCACCACGCCGTGCGCGGTCTGTCT10.8403361344537815No Hit
GGTCGGCTCCGTGCTCACCCGCTGGGCCGAGCTGGTGGGGCCGGAGACTG10.8403361344537815No Hit
GGCGAGCGCACCGAGCTCTACGACGGCCACGTCCCGGAGGACCGCTGGGT10.8403361344537815No Hit
TGATTGGTTCAGGAGAGGGGCACTGTGGTGGGGTCTGTCTCTTATACACA10.8403361344537815No Hit
GCTGGGAGGGGCCCGAAGCCCCCTTCCTTTGCCTGGCAGGAGGGACCGGC10.8403361344537815No Hit
ATCAGCAGCGGCACGTCACCGGGAGCGTCGGCCTCGGCGTCGGCGTGCTC10.8403361344537815No Hit
GGCGGTGGCCAGCATCAGGCCCGCGGCGCCGAGGGACAGCAGCGGCAGCA10.8403361344537815No Hit
TTCCTCCCCACACTCATCGCCCTTACCACGCTACTCCTACCTATATCCCC10.8403361344537815No Hit
ACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAACCCCAGGGTT10.8403361344537815No Hit
GGTGTATGAGTTGGTCGTAGCGGAATCGGGGGTATGCTGTTCGAATTCAT10.8403361344537815No Hit
CACCAAGTCCCCACGTAGCATGACACTTTCAAATCAGCTAACCTGGTGTA10.8403361344537815No Hit
CTGTTTTTAAGCCTAATGTGGGGACAGCTCATGAGTGCAAGACGTCTTGT10.8403361344537815No Hit
CACCCGGGAGGACCTGCTCCGGGCGGCGGCCCCGTGGCTCTCCGACGCCG10.8403361344537815No Hit
GATGAAGGCTACAAAGTAAGCGCAAGTACCCACGTAAAGACGTTAGGTCA10.8403361344537815No Hit
GTGCTACTCTCCTCGCTCCGGGCCCATAACACTTGGGGCTGTCTCTTATA10.8403361344537815No Hit
CTCCTGGGCCTGCTTCTTGGTGCCGACGAACAGGATGGTGCCGCCGTGGG10.8403361344537815No Hit
GGCCTGGGCGCCGCCGGCCGCGTAGACCTCGTCCACGCCCAGCAGCTGTC10.8403361344537815No Hit
GGTCGGGGCCGCCGCGCCACGCGGGCGGGGGCCGGGGTCGGGACTGTCTC10.8403361344537815No Hit
GACACCTGCTAGGTGTAAGGAGAAGATGGTTAGGTCTACGGAGGCTCCAG10.8403361344537815No Hit
GTTTTAGCATTGGAGTAGGTTTAGGTTATGTACGTAGTCTAGGCCATATG10.8403361344537815No Hit
CCAGGAGGCATCATGCCCGCACCGACCCTCACCGATCTGCTCGAGGCCGG10.8403361344537815No Hit
GTGCAGCGGGCGCGGTCTCGGACATGGACCGAGCCTATCCCTGTCTCTTA10.8403361344537815No Hit
CTCCCACGCCCCGCGGCTGAGCAGGCGCTGCCGCCGGGCGTCGGTCATCT10.8403361344537815No Hit
GTTCTACGGCGGAGACGCCGGGCTCCTGGTGGCCCAGACCTGTCTCTTAT10.8403361344537815No Hit
AACCTGGAGTGACTATATGGATGCCCCCCACCCTACCACACATTCGAAGA10.8403361344537815No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG10.8403361344537815No Hit
AAAACCAGGGACATGGCGCACCCCCCCCGCGCCCGACCCACCCCGCCCCC10.8403361344537815No Hit
GGACTACCGGCTCCCCGGTGACCAGGCGGACCACCGTGTCCGCGACCTCG10.8403361344537815No Hit
CCTTGAAGGTGCCGGAGCCCTGGATCCGCCACACGTCCGTCACCGGGGTG10.8403361344537815No Hit
GGCCGGGAGATCAGCAGGCGGATGGAGTTCGTGCCGCAGTCCACGCCCTG10.8403361344537815No Hit
GTCGCCGATCTGCGTCGTGCGGGTGGGCCAGTCCGGCACCTGTCTCTTAT10.8403361344537815No Hit
GTCGACACGTGGCGGGCCACCGGCGTCGAACGCGCCCGCCAGGGGGTGCC10.8403361344537815No Hit
GGGCTGGATTGGGACGCCGAGCCGGTGCGCCAGTCCGAGCGCACCGCCCT10.8403361344537815No Hit
CGTCCGGGACGGGGGCCAGCTCCTCCGCCGTGCCCTCCGCGATCTCGAAC10.8403361344537815No Hit
GACGTAGACACACGAGCATATTTCACCCCCGCTACCATAATCATCGCTAC10.8403361344537815No Hit
CTGTGGGGACTGGTTGGGCTGGGCTCTGGGCCTAGCAGCGGCGGGGGCGT10.8403361344537815No Hit
CATAAATAGTATGGCTTTGAAGAAGGCGTGGGTACAGATGTGCAGGAATG10.8403361344537815No Hit
GACCTGGGACAACGGCAAGGCCGTCCGGGAGACCCTCAACGCGGACTTGC10.8403361344537815No Hit
TCTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTT10.8403361344537815No Hit
AGACGGAACAGTCGGGGCTGCGGGTTGCCGGGCTGCGGCTGCTGTCTCTT10.8403361344537815No Hit
CTCCTCTGGTCTGTGGGAAAGGCCCCAGCAGGAGATAGGGGGAGTGGGCA10.8403361344537815No Hit
GCGCATGACGGGCGCCTGGCCGCCGATGATGTGGGGCGACTTGATCCAGG10.8403361344537815No Hit
GGGCAAAAGGAGGGCAATTTCTAGCTGAAATATTAACAAGGGAATAGCTA10.8403361344537815No Hit
GCCCACGAGGACGCGCGGGCCGACCTCGCCACGGCCCGCGCCGCGGACTG10.8403361344537815No Hit
CCTCAAGGACCTGGCCGGCCGCCGCTGGTCCGCGGAGCTGTCTCTTATAC10.8403361344537815No Hit
GTGCGGGACGGGGCGCAGCGGTCCGCCGCCCCCTGGGTCCCCACTGCTGT10.8403361344537815No Hit
CACGGACACCGCGGAGCAGTGGGGCCACATCGCCGGCCGCCTCGAGAACC10.8403361344537815No Hit
GTGTAGGCGAATAGGAAATATCATTCGGGCTTGATGTGGGGAGGGGTGTT10.8403361344537815No Hit
CCACGGCTTCGCCGGTGTGGGCGCCTCGCACGGCCAGCACAAGAACCACC10.8403361344537815No Hit
CCGCGGAACTGGCCGAGCTCCTGGCCACGGCACGCGAGCTGTCTCTTATA10.8403361344537815No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers