SRR1780564_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780564_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	57877
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	823	1.4219810978454308	No Hit
ATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTT	427	0.7377714808991482	Illumina PCR Primer Index 9 (95% over 22bp)
ATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTAGCGGATGATTCAGCC	139	0.24016448675639718	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	106	0.1831470186775403	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	59	0.10194032171674412	No Hit
CTTTACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC	58	0.10021251965374846	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACTCAG	15	0.00221421	70.00001	7
CTAGAAC	20	0.0069188783	52.5	24
GAGTGAA	20	0.0069188783	52.5	28
GACAATC	20	0.0069188783	52.5	57
ATCAAGC	20	0.0069188783	52.5	39
TACATAC	20	0.0069188783	52.5	3
AAGCCCG	20	0.0069188783	52.5	42
AGTGAAG	20	0.0069188783	52.5	29
TGACAAT	20	0.0069188783	52.5	56
AAACCTT	20	0.0069188783	52.5	19
CCGAATG	20	0.0069188783	52.5	46
CAATCGA	20	0.0069188783	52.5	59
AGGTGGG	20	0.0069188783	52.5	7
GCCCGAA	20	0.0069188783	52.5	44
ATCGAGT	20	0.0069188783	52.5	61
AATCGAG	20	0.0069188783	52.5	60
TATGCCG	225	0.0	40.444447	43
ATGCCGT	225	0.0	40.444447	44
TGAAAAA	210	0.0	40.000004	59
CAGAGAA	35	0.001245911	40.0	41