SRR1780562_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780562_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	74105
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	869	1.1726604142770392	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	516	0.6963092908710613	RNA PCR Primer, Index 42 (95% over 22bp)
ATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTAGCGGATGATTCAGCC	231	0.3117198569597193	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	102	0.137642534241954	No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA	86	0.11605154847851022	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATATCGTATGCCGT	84	0.11335267525807975	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGGTCT	20	7.879847E-5	70.0	55
GTCTCGA	30	1.01110345E-7	70.0	60
CGTCTCG	30	1.01110345E-7	70.0	59
TCTCGAG	30	1.01110345E-7	70.0	61
CTCGAGT	30	1.01110345E-7	70.0	62
CTCTAGC	15	0.002216677	70.0	2
CGGATGA	40	1.0490112E-8	61.25	37
ATGATTC	35	2.9378498E-7	59.999996	40
TTCAGCC	35	2.9378498E-7	59.999996	44
ACGTCTC	35	2.9378498E-7	59.999996	58
TCGAGTG	35	2.9378498E-7	59.999996	63
CGAGTGA	30	8.303303E-6	58.333332	64
TCCGGCG	25	2.376418E-4	55.999996	22
TGCGGTC	25	2.376418E-4	55.999996	54
CGGGGTC	25	2.376418E-4	55.999996	27
TCTGTTA	25	2.376418E-4	55.999996	59
GGTTGCG	25	2.376418E-4	55.999996	51
GTTGCGG	25	2.376418E-4	55.999996	52
GCGGATG	45	2.6577254E-8	54.444443	36
CGCCATT	45	2.6577254E-8	54.444443	17