SRR1780559_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780559_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	40
Sequences flagged as poor quality	0
Sequence length	50
%GC	61

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
ATACAGTGCAAGGATGTGATAGTGATTTTGCATATACCAAAGGCACTCAA	1	2.5	No Hit
CTCCACCGTGGTCCGATTCCCGGGCCGCACCGCGCGCCGGCGCCGCGCCA	1	2.5	No Hit
GCCGCGGCGTCCCGGTAGCGGGCGGCGGCGTCGGCGGACTGCCGGGCCAC	1	2.5	No Hit
GGACATCGCGGACTCGCTGCCCGAGGGCGGCGCGCAGTCGCCCGCGATGA	1	2.5	No Hit
AGCTCACCGCGCAGGCCTTCACCACCGACATCGCCAAGCTCTGTCTCTTA	1	2.5	No Hit
GACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCC	1	2.5	No Hit
CCGCCGAGCGGCGCATGCTGCGCCGCCGGGGGCTGCTGGAAGGGCTGTCT	1	2.5	No Hit
GAATTATATCCTTCTTGCTCATCAGTTGATGATACGCCCGAGCAGATGCC	1	2.5	No Hit
CCGCCCAGCAGCACCTCCTGGTGCGCCTCCAGGCCGCGCAGGCGCACCGC	1	2.5	No Hit
GAAGATGACGATCAACGCCCTCAACTCGGGCGCCTCGGGCTGGCTCTGTC	1	2.5	No Hit
CTGCTGGATCGCGTCGCGGTGGTTGCGCAGCAGCAGACCCGCGAACTGGA	1	2.5	No Hit
TCTCTTATACACATCTCCGAGCCCACGACAAACGGTCATCTCGTATGCCG	1	2.5	No Hit
AGATAGGCCCCACATCACGTTCGAGAGTGCGGGTGGGGCCTGTCTCTTAT	1	2.5	No Hit
CCTTTTCATCAATCGCCCACATCACTCGAGACGTAAATTATGGCTGAATC	1	2.5	No Hit
GCTCGGCGACGTCCTCCACGCGCTCCATGACCCAGCCGCGCCTGTCTCTT	1	2.5	No Hit
CTTAAAGACCTTTCTTTCTGCTACGGCCTGGCATAGTGGCTCCCACCTGT	1	2.5	No Hit
TCCCGGAGCGCACCTGGCGTGCGGCGGACGTGCACGTGCCTGTCTCTTAT	1	2.5	No Hit
ATAGTGGGGGGTAAGGCGAGGTTAGCGAGGCTTGCTAGAAGTCATCAAAA	1	2.5	No Hit
GCACCCTCCTGCGTGACGGCGTGCGGCAGGTCGTGGCGGCCCGCCGCGAC	1	2.5	No Hit
CTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	1	2.5	No Hit
GGCTTGGATTAGCGTTTAGAAGGGCTATTTGTTGTGGGTCTCATGAGTTG	1	2.5	No Hit
AACTAAAGAAGCAGCCAGGGAAAATCAGACATCTCCGAGCCCACGAGGCT	1	2.5	No Hit
ACCATGAGGTACACCACGCGGATGAAGCCGGTGCCGCGGCTGTCTCTTAT	1	2.5	No Hit
CGCCAGGGCCGTTCCGCGTCCTCGGCGAGCATCGCCCGGTCCTGGTGCTG	1	2.5	No Hit
CCCACGAGACCCAACACGATATCGTATGCCGTCTTCTGCTTGGAAAAAAA	1	2.5	RNA PCR Primer, Index 21 (96% over 26bp)
GCCATGATGATGCCGCCGACCGCCATGATCGGCACGGCCACCATGAAGTC	1	2.5	No Hit
GGGCTGATCTCCGCACCGGCGTAGATGGTGCCGCCGTCGAGGCGCACACC	1	2.5	No Hit
CTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTAT	1	2.5	No Hit
CCCCGCCCGGCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCCGTC	1	2.5	No Hit
TCGCGATACTCCGTGCCGTGCTCGGCCGTGACGTGCTCCCAGAACGCGGC	1	2.5	No Hit
CGCCCAGGTCATGCGCGTCATCACGCGGTCCTGGCGCTGTCTCTTATACA	1	2.5	No Hit
CTTCAGGGCCCTGTTCAACTAAGCACTCTACTCTCAGTTTACTGCTAAAT	1	2.5	No Hit
ACGCCGGTGCGGGGGGGCCGGTGGAGGTCGCCCGGCACCGGGTCTGTCTC	1	2.5	No Hit
ACCAACCACACCTAGCATTCCTGCACATCTGTACCCACGCCTTCTTCAAA	1	2.5	No Hit
CTATTTAGGCTTTATGGCCCTGAAGTAGGAACCAGATGTCGGATACGGTT	1	2.5	No Hit
CAACCCGTCCTACCTCTCCGAGGGCCTGGCCGTGGTGGACCAGCCGCAGG	1	2.5	No Hit
GCCGAGGAGTCCGAGTTCGTGGCATCCGTTCTGGGCCTGTCTCTTATACA	1	2.5	No Hit
CCACCCGGCGCCGAGGCAACCGCAGGCAAAGGAGCCAGCACCATGACCGT	1	2.5	No Hit
GAACAGCGAGTCGACGAGGCCGTGACGGCGCTCGGTGGTCCAGGCGGGGT	1	2.5	No Hit
GGACATGGTTCTTGTTCCCATTGCCCGTGGGGCCACCTGCCTCCCTCACG	1	2.5	No Hit

Adapter Content

Adapter graph

Kmer Content

No overrepresented Kmers

Summary