SRR1780545_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780545_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	32040
Sequences flagged as poor quality	0
Sequence length	50
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGT	401	1.2515605493133584	No Hit
ATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCGTCTT	56	0.17478152309612985	RNA PCR Primer, Index 17 (95% over 22bp)
TCTTATACACATCTCCGAGCCCACGAGACAAATACAGATCTCGTATGCCG	48	0.149812734082397	No Hit
GTTGTAGCCCGTGCGAGAATAATGATGTATGCTTTGTTTCTGTTGAGTGT	42	0.1310861423220974	No Hit
ATTCTCACCAGACCTCCTAGGCGACCCAGACAATTATACCCTAGCCAACC	39	0.12172284644194756	No Hit
ATCCTATACAACCGTATCGGCGATATCGGTTTCATCCTCGCCTTAGCATG	37	0.11548064918851435	No Hit
CTTCTAGTAAGCCTCTACCTGCACGACAACACATAATGACCCACCAATCA	35	0.10923845193508115	No Hit
GGTTAAAGGAGCCACTTATTAGTAATGTTGATAGTAGAATGATGGCTAGG	35	0.10923845193508115	No Hit
CTGTAGCATTGTTCGTTACATGGTCCATCATAGAATTCTCACTGTGATAT	35	0.10923845193508115	No Hit
AGCTTACACAATAGCTTTTATAGTAAAGATACCTCTTTACGGACTCCACT	34	0.10611735330836455	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATGTTG	20	7.744879E-4	43.996872	28
GTTGGAT	20	7.744879E-4	43.996872	31
CAAAAAA	20	7.744879E-4	43.996872	27
GGCTGTG	25	0.0023196463	35.1975	7
ATGTTGG	25	0.0023196463	35.1975	29
TACCCAC	25	0.0023196463	35.1975	5
ATGCCGT	50	2.2693384E-6	30.797812	44
TGTTGGA	30	0.0056648636	29.33125	30
TATGTGT	30	0.0056648636	29.33125	20
GGTAGGC	30	0.0056648636	29.33125	13
AAGTTGA	30	0.0056648636	29.33125	6
TATGCCG	55	4.768661E-6	27.99801	43
ACAGATC	50	8.099018E-5	26.398125	33
CAGATCT	50	8.099018E-5	26.398125	34
AGATCTC	50	8.099018E-5	26.398125	35
GGGTAGG	45	0.0013692942	24.442709	12
AGCCCAC	55	1.5476196E-4	23.998295	17
GATCTCG	55	1.5476196E-4	23.998295	36
ATCTCGT	65	1.7438899E-5	23.690624	37
TCTCGTA	65	1.7438899E-5	23.690624	38