SRR1780543_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780543_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	239894
Sequences flagged as poor quality	0
Sequence length	50
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

No overrepresented sequences

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTGCGA	35	7.270626E-6	37.71089	26
TGCGATG	35	7.270626E-6	37.71089	28
TGTTCCC	25	0.0023452793	35.211514	10
CGCAAAG	25	0.0023452793	35.211514	12
AGAACAA	25	0.002350084	35.196835	30
GCTACTA	25	0.002350084	35.196835	44
CTACGGG	35	3.211931E-4	31.425743	38
CCAACGT	35	3.211931E-4	31.425743	22
GCACGGA	30	0.005726791	29.342926	11
AATTCGG	30	0.005738478	29.330694	17
CATCGCA	30	0.005738478	29.330694	26
GTACAAG	40	6.976612E-4	27.526218	1
ACAAATC	40	7.0192886E-4	27.497524	20
GTTAAGC	40	7.0192886E-4	27.497524	3
TGTCGTA	40	7.0192886E-4	27.497524	37
ATACCAT	40	7.0192886E-4	27.497524	6
GCCCAGT	45	0.0013956843	24.442244	19
ATTAGAG	45	0.0013956843	24.442244	3
GACCGGG	45	0.0013956843	24.442244	31
CGACCGG	45	0.0013956843	24.442244	30