FastQCFastQC Report
Wed 25 May 2016
SRR1780540_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1780540_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4041
Sequences flagged as poor quality0
Sequence length76
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACCACT200.006458767752.557
Produced by FastQC (version 0.11.5)