SRR1780536_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780536_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	52156
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCGTCTT	1033	1.9805966715238896	Illumina PCR Primer Index 1 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCGT	676	1.296111665004985	No Hit
CTTTACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCGTC	271	0.5195950609709333	No Hit
CTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCGTC	128	0.24541759337372496	No Hit
TATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCGTCT	82	0.15722064575504258	Illumina PCR Primer Index 1 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCG	81	0.15530332080681034	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCC	55	0.10545287215277246	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGGTCACAATATCGTATGCCGT	54	0.10353554720454022	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTATC	15	0.0022129812	70.0	39
ACACCAT	15	0.0022129812	70.0	54
TGACGCA	15	0.0022129812	70.0	50
CGTAGAC	15	0.0022129812	70.0	3
ATGACGT	15	0.0022129812	70.0	30
TATCGTG	15	0.0022129812	70.0	42
ATTGGCT	25	2.369861E-4	55.999996	25
CGGAATA	20	0.0069150673	52.5	69
TACCAGG	20	0.0069150673	52.5	59
CGTCTGA	20	0.0069150673	52.5	34
AAGCCCT	20	0.0069150673	52.5	49
TTCGGAA	20	0.0069150673	52.5	67
TGAGCAC	20	0.0069150673	52.5	49
GGCTCAT	20	0.0069150673	52.5	56
ATATTCT	20	0.0069150673	52.5	47
TTTACAC	55	2.215529E-9	50.909096	2
ATCGTGT	35	0.0012447799	40.0	43
TCTATAC	35	0.0012447799	40.0	3
TTGGCTT	40	0.0023983887	35.0	26
CTATACA	40	0.0023983887	35.0	1