SRR1780535_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780535_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	574700
Sequences flagged as poor quality	0
Sequence length	50
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGT	14782	2.5721245867409084	No Hit
ATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGTCTT	9726	1.6923612319471026	RNA PCR Primer, Index 32 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCG	2774	0.4826866191056203	No Hit
CTTTACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGTC	2113	0.3676700887419523	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCC	1501	0.261179745954411	No Hit
CTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGTC	1180	0.20532451713937708	No Hit
TATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCCGTCT	886	0.15416739168261703	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCAATCTTAATCTCGTATGCC	786	0.1367670088741952	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTCTT	985	0.0	43.104893	44
GCCGTCT	1085	0.0	39.13209	43
GATACTT	30	1.2912926E-4	36.709934	1
CGGTATG	25	0.0023522258	35.19861	43
CGTGCGA	65	4.656613E-10	33.856598	10
CGAGAAT	65	4.656613E-10	33.856598	14
GTCGCCC	60	7.998096E-9	32.998695	37
CTTATAA	55	1.3574754E-7	32.03776	1
CCGTGCG	70	1.031367E-9	31.435535	9
CTACGAA	35	3.218165E-4	31.424595	8
CTATACA	225	0.0	29.367949	1
GCGCCAA	45	4.0669704E-5	29.332172	35
TACATAC	45	4.0669704E-5	29.332172	3
CCGTGCT	30	0.005746091	29.32962	20
CTTGGCA	30	0.005746091	29.32962	19
CTTTATA	85	2.6375346E-10	28.46946	2
GATGTAT	70	3.5883204E-8	28.282135	24
TGCCGTC	1510	0.0	28.263783	42
CTGCTTA	40	7.029236E-4	27.498913	39
TCCGTGC	40	7.032812E-4	27.496523	22