SRR1780532_2.fastq.gz FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	SRR1780532_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10113
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACTTAA	20	0.006755182	52.500004	37
ACGAGCA	40	0.002308042	35.000004	69
CGAGCAG	40	0.002308042	35.000004	70
GCCGACG	115	9.170789E-4	18.26087	70
TGCCGAC	140	1.6455528E-4	17.5	69
CTGCCGA	145	2.1525304E-4	16.896551	68
GCTGCCG	150	2.789033E-4	16.333332	67
CGCTGCC	155	3.5817525E-4	15.806453	66
ACGCTGC	160	4.5616415E-4	15.312501	65
CTGACGC	160	4.5616415E-4	15.312501	62
GACGCTG	165	5.7643815E-4	14.848486	64
TGACGCT	165	5.7643815E-4	14.848486	63
TCTGACG	170	7.2309095E-4	14.411765	61
CATCTGA	190	0.0016769388	12.894736	59
ATCTGAC	190	0.0016769388	12.894736	60
ACATCTG	230	4.898212E-4	12.173914	58
CACATCT	250	9.878138E-4	11.2	57