SRR1780532_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780532_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10113
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCCGTCTT	92	0.9097201621675072	TruSeq Adapter, Index 5 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCCGT	92	0.9097201621675072	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCCG	28	0.27687135370315435	No Hit
CTTTACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCCGTC	18	0.17798872738059923	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCC	18	0.17798872738059923	No Hit
CTATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCCGTC	15	0.14832393948383268	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTGTGGTGATCTCGTATGCC	14	0.13843567685157718	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAACAA	20	0.006755182	52.500004	59
GGAGCCT	20	0.006755182	52.500004	13
TCTGCTT	60	2.2755376E-7	40.833332	53
GTCTTCT	60	2.2755376E-7	40.833332	49
CGTATGC	60	2.2755376E-7	40.833332	41
TCTTCTG	60	2.2755376E-7	40.833332	50
CTTCTGC	60	2.2755376E-7	40.833332	51
CGTCTTC	55	6.0646453E-6	38.18182	48
TTCTGCT	65	4.2647116E-7	37.692307	52
CTGCTTG	65	4.2647116E-7	37.692307	54
TTGAAAA	65	4.2647116E-7	37.692307	58
CTTGAAA	65	4.2647116E-7	37.692307	57
GTATGCC	60	1.1017746E-5	35.0	42
TATGCCG	60	1.1017746E-5	35.0	43
CCGTCTT	60	1.1017746E-5	35.0	47
TGCTTGA	70	7.622166E-7	35.0	55
GCTTGAA	70	7.622166E-7	35.0	56
TCGTATG	60	1.1017746E-5	35.0	40
GCCGTCT	60	1.1017746E-5	35.0	46
TGAAAAA	70	7.622166E-7	35.0	59