FastQCFastQC Report
Wed 25 May 2016
SRR1780508_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1780508_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45762
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCCGTT150.002211922369.9945411
CCTTATG207.850691E-569.994543
GTTTACT150.002211922369.9945415
TAGCCGT150.002211922369.9945410
GCGCAGT150.002211922369.9945415
AGCGGGC150.002211922369.9945410
CGCTCTA150.002211922369.9945435
ATGAGCG150.002211922369.994547
GAGCGGG150.002211922369.994549
TCTAAGA150.002211922369.9945438
CGGGCGC150.002211922369.9945412
GCGGGCG150.002211922369.9945411
CAGTGAT150.002211922369.9945418
GTGAGCA150.002211922369.9945438
TGAGCGG150.002211922369.994548
CGTTTAC150.002211922369.9945414
CCGTTTA150.002211922369.9945413
GCCGTTT150.002211922369.9945412
GCTTTCG150.002211922369.9945430
TGCCCTA200.00691179352.49590352
Produced by FastQC (version 0.11.5)