SRR1780504_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780504_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	69865
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCGT	3414	4.8865669505474845	No Hit
ATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCGTCTT	3160	4.523008659557719	No Hit
CTTTACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCGTC	1146	1.640306305016818	No Hit
CTATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCGTC	548	0.7843698561511486	No Hit
TATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCGTCT	308	0.44085021112144857	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCG	294	0.42081156516138263	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGCTGGGTATATCGTATGCCGT	164	0.23473842410362844	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCC	152	0.21756244185214343	No Hit
CTTAATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCG	139	0.198955127746368	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCC	135	0.19322980032920634	No Hit
CTTATAACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCG	116	0.16603449509768842	No Hit
ATACACATCTCCGAGCCCACGAGACTGCTGGGTAACTCGTATGCCGTCTT	112	0.16030916768052672	No Hit
CTTAACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCGTC	112	0.16030916768052672	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCC	103	0.14742718099191296	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGCTGGGTAACTCGTATGCCGT	102	0.14599584913762256	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGCTGGGTACCTCGTATGCCGT	90	0.12881986688613756	No Hit
TTATACACATCTCCGAGCCCACGAGACTGCTGGGTATCTCGTATGCCGTC	81	0.1159378801975238	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTCTCG	15	0.0022161426	70.0	33
TTTACAC	195	0.0	62.820515	2
ACGACAA	40	1.0477379E-8	61.25	50
CGACAAA	35	2.9353941E-7	60.0	51
TACGACA	35	2.9353941E-7	60.0	49
TAACAAG	35	2.9353941E-7	60.0	31
CTATACA	80	0.0	56.875	1
CTTTACA	220	0.0	54.090908	1
AAATCGC	40	7.382696E-7	52.5	66
CAAACAG	40	7.382696E-7	52.5	54
GGACTTA	20	0.00692487	52.5	63
GTCTCTC	20	0.00692487	52.5	32
TTGTACT	40	7.382696E-7	52.5	4
CTTGGAA	20	0.00692487	52.5	41
CGCTCAT	40	7.382696E-7	52.5	70
CTAAAAT	40	7.382696E-7	52.5	63
CTACGAC	40	7.382696E-7	52.5	48
TCGCTCA	40	7.382696E-7	52.5	69
CGCAGTG	20	0.00692487	52.5	16
CAAGCTC	40	7.382696E-7	52.5	34