SRR1780501_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780501_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	325449
Sequences flagged as poor quality	0
Sequence length	50
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGT	30445	9.354768335438118	No Hit
ATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGTCTT	24813	7.624236055418822	RNA PCR Primer, Index 20 (95% over 21bp)
CTTTACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGTC	8124	2.496243651078971	No Hit
CTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGTC	4463	1.3713362155053481	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCG	3558	1.093258851617304	No Hit
TATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGTCT	2218	0.6815199923797585	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCC	1642	0.504533736468694	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCC	1273	0.39115191627566837	No Hit
CTTAATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCG	1146	0.35212890498972194	No Hit
CTTATAACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCG	966	0.29682070001751426	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCC	941	0.2891390048824854	No Hit
CTTAACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGTC	714	0.2193892130564236	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCG	553	0.16991909638683786	No Hit
TTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGTC	484	0.1487176178141583	No Hit
CTTATCACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGTC	472	0.14503040414934446	No Hit
CTTATTACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCG	424	0.13028154949008908	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAACATT	20	7.85126E-4	43.996464	41
CCGTCTT	2630	0.0	42.407238	44
TTTACAC	940	0.0	38.847946	2
CTTTACA	965	0.0	38.081184	1
GCCGTCT	2945	0.0	37.871323	43
CTATACA	585	0.0	36.11076	1
GCGTTGA	25	0.0023458872	35.213406	15
TGGCGTG	50	5.927359E-8	35.197174	23
TACTGTC	25	0.0023512011	35.197174	41
ATTGGCG	50	5.927359E-8	35.197174	21
GCGTGAA	50	5.927359E-8	35.197174	25
TTACACA	1095	0.0	33.750713	3
CTTATAC	4340	0.0	32.44976	1
TTATACA	4360	0.0	32.190075	2
TGAAGGT	55	1.3694626E-7	31.997429	28
TGGCGGA	35	3.2142494E-4	31.426046	27
CGAGGCT	35	3.2142494E-4	31.426046	31
GCGGATA	35	3.2142494E-4	31.426046	29
GAACCAT	35	3.2142494E-4	31.426046	22
TGGGATG	35	3.2142494E-4	31.426046	22