SRR1780498_2.fastq.gz FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	SRR1780498_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	54174
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACTAG	15	0.0021737039	70.32004	1
CACTAGA	15	0.0022140208	69.995384	2
CCCTAAG	20	0.0067926766	52.74003	1
AGACGAG	20	0.0069183004	52.496536	55
AGGCAGG	20	0.0069183004	52.496536	14
GCTAGTC	20	0.0069183004	52.496536	8
TACTCTG	20	0.0069183004	52.496536	43
GCAGGCG	20	0.0069183004	52.496536	16
TTTTACG	20	0.0069183004	52.496536	51
GGCTAAG	20	0.0069183004	52.496536	55
ACTTTTA	35	0.0012456074	39.99736	51
GATTATT	45	0.0042740298	31.109058	34
CTGATGA	45	0.0042740298	31.109058	29
CGACGAA	205	2.1043837E-4	13.657636	70
CCGACGA	265	0.0018217309	10.565341	69
TGCCGAC	350	0.0017661185	8.999407	70
GCCGACG	315	0.0076048137	8.888303	68
CTGCCGA	395	0.005277155	7.9741573	69