SRR1780481_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780481_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	295104
Sequences flagged as poor quality	0
Sequence length	50
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

No overrepresented sequences

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCTTAA	25	0.0023577507	35.17614	32
TATACTG	25	0.0023597118	35.170177	5
TATACGC	25	0.0023597118	35.170177	3
TTAATAC	40	1.8259941E-5	32.972046	3
CTTAATA	35	3.2216083E-4	31.41259	2
CGACATG	30	0.005757114	29.31345	28
TTGACAT	30	0.005757114	29.31345	27
TTACGTT	30	0.005757114	29.31345	31
TCCGCTT	45	4.0780695E-5	29.313448	31
ACTATTG	30	0.0057618846	29.308483	3
CCGATAC	30	0.0057618846	29.308483	44
AACGGCC	40	7.0264057E-4	27.495337	37
GCCGAAA	40	7.033374E-4	27.490677	23
GTATAAC	40	7.0543145E-4	27.476704	3
TTATACG	50	8.3492974E-5	26.386576	2
TCGGTGG	160	0.0	24.729033	42
CTGCGGA	45	0.0013792397	24.494287	18
CGGACGA	45	0.0013833425	24.481808	21
GATGTAG	45	0.0013915782	24.456886	1
TGTTCGA	45	0.0013943325	24.44859	10