SRR1780466_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780466_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	75502
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCCGTCTT	3712	4.916426054938942	RNA PCR Primer, Index 27 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCCGT	2936	3.8886387115573093	No Hit
CTTTACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCCGTC	1223	1.6198246404068768	No Hit
CTATACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCCGTC	472	0.6251490026754258	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCCG	300	0.3973404678021774	No Hit
TATACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCCGTCT	270	0.35760642102195966	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCC	174	0.2304574713252629	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCC	142	0.18807448809303065	No Hit
CTTATAACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCCG	130	0.17218086938094354	No Hit
CTTAATACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCCG	126	0.1668829964769145	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGACCCTATATCGTATGCCGT	125	0.16555852825090725	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCC	115	0.15231384599083467	No Hit
ATACACATCTCCGAGCCCACGAGACTTGACCCTAACTCGTATGCCGTCTT	108	0.14304256840878388	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGACCCTACCTCGTATGCCGT	90	0.11920214034065323	No Hit
CTTAACACATCTCCGAGCCCACGAGACTTGACCCTATCTCGTATGCCGTC	88	0.11655320388863871	No Hit
ATACACATCTCCGAGCCCACGAGACTTGACCCTATATCGTATGCCGTCTT	86	0.1139042674366242	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGACCCTAACTCGTATGCCGT	78	0.10330852162856613	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACATATG	15	0.00221684	70.0	1
CCTTGAA	15	0.00221684	70.0	56
AGTTTGG	20	0.0069270306	52.500004	8
AGCCTTG	20	0.0069270306	52.500004	22
GAACAGT	20	0.0069270306	52.500004	13
TATAACA	20	0.0069270306	52.500004	3
CTTTACA	210	0.0	51.666668	1
TTTACAC	215	0.0	48.83721	2
TTACACA	225	0.0	46.666668	3
ACATAGA	30	5.844378E-4	46.666664	1
AAAAGTA	35	0.0012483324	40.000004	31
CCTCTAG	35	0.0012483324	40.000004	1
GTGAGTA	45	9.120466E-5	38.88889	61
CTATACA	75	3.4677214E-8	37.333336	1
CTTGGGC	50	1.6954217E-4	35.000004	47
GTTGTTG	50	1.6954217E-4	35.000004	21
TATTAAG	50	1.6954217E-4	35.000004	15
TCTTTAT	40	0.0024051927	35.000004	1
CTTTATA	40	0.0024051927	35.000004	2
TTTGATA	50	1.6954217E-4	35.000004	37