SRR1780438_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780438_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	64857
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCGT	3271	5.043403179302157	No Hit
ATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCGTCTT	3071	4.735032456018626	RNA PCR Primer, Index 35 (95% over 21bp)
CTTTACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCGTC	1055	1.6266555653206287	No Hit
CTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCGTC	474	0.7308386141819696	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCG	349	0.5381069121297625	No Hit
TATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCGTCT	279	0.4301771589805264	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCC	185	0.2852429190372666	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCC	150	0.23127804246264858	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATATCGTATGCCGT	149	0.22973618884623093	No Hit
CTTAATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCG	119	0.1834805803537012	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCC	99	0.15264350802534807	No Hit
CTTATAACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCG	87	0.13414126462833617	No Hit
CTTAACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCGTC	85	0.13105755739550087	No Hit
TTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCGTC	80	0.12334828931341259	No Hit
ATACACATCTCCGAGCCCACGAGACTGGGTTTCATATCGTATGCCGTCTT	80	0.12334828931341259	No Hit
ATACACATCTCCGAGCCCACGAGACTGGGTTTCAACTCGTATGCCGTCTT	74	0.11409716761490664	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGGGTTTCAACTCGTATGCCGT	72	0.11101346038207133	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATACA	65	0.0	59.230774	1
TTAATAC	25	2.3741944E-4	55.999996	3
CCAGGGA	20	0.0069226427	52.5	3
TTTCAGC	20	0.0069226427	52.5	33
GCCGAGC	20	0.0069226427	52.5	67
TCTTTAT	35	2.0655536E-5	50.0	1
ATAACAC	35	2.0655536E-5	50.0	4
CTTTATA	35	2.0655536E-5	50.0	2
TTTACAC	180	0.0	48.611115	2
TTACACA	200	0.0	47.249996	3
CTTATAA	40	4.546788E-5	43.75	1
CTTTACA	200	0.0	43.749996	1
CTTAATA	35	0.0012470287	40.0	2
TAATACA	35	0.0012470287	40.0	4
TAACACA	45	9.106207E-5	38.88889	5
TTTATAC	55	6.60202E-6	38.18182	3
TCAACTA	40	0.0024026963	35.0	5
CACAGAA	55	2.9626352E-4	31.818184	50
TATAACA	55	2.9626352E-4	31.818184	3
TCTTAAT	50	0.007161093	27.999998	1