SRR1780424_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780424_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	139737
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAATTCGTTATCTCGTATGCCGT	4223	3.0221058130631118	No Hit
ATACACATCTCCGAGCCCACGAGACAATTCGTTATCTCGTATGCCGTCTT	3967	2.8389045134788926	No Hit
CTTTACACATCTCCGAGCCCACGAGACAATTCGTTATCTCGTATGCCGTC	1515	1.0841795658987956	No Hit
CTATACACATCTCCGAGCCCACGAGACAATTCGTTATCTCGTATGCCGTC	700	0.5009410535505987	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAATTCGTTATCTCGTATGCCG	386	0.2762332095293301	No Hit
TATACACATCTCCGAGCCCACGAGACAATTCGTTATCTCGTATGCCGTCT	353	0.25261741700480184	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAATTCGTTATCTCGTATGCC	259	0.1853481898137215	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAATTCGTTATCTCGTATGCC	202	0.14455727545317273	No Hit
CTTAATACACATCTCCGAGCCCACGAGACAATTCGTTATCTCGTATGCCG	179	0.12809778369365307	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATTCGTTATATCGTATGCCGT	145	0.10376636109262401	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGGCTA	20	7.9043006E-5	70.0	26
GGCGAAG	20	7.9043006E-5	70.0	43
TAGGGCG	25	2.3837485E-4	55.999996	40
CCTGCGG	25	2.3837485E-4	55.999996	53
GTAATCA	20	0.006939325	52.5	4
TGCGATG	20	0.006939325	52.5	28
ACATGTA	20	0.006939325	52.5	34
TTTGAAC	20	0.006939325	52.5	31
CTTAGGA	20	0.006939325	52.5	27
CTATACA	155	0.0	51.935486	1
GGAGTAA	35	2.0779818E-5	50.0	1
TTTACAC	190	0.0	49.73684	2
AACCGCC	30	5.861588E-4	46.666664	19
TGTATTC	30	5.861588E-4	46.666664	21
GATCACA	30	5.861588E-4	46.666664	1
GCGGCGT	30	5.861588E-4	46.666664	56
CTTTATA	55	1.3015597E-7	44.545452	2
TTTATAC	75	7.4760464E-10	42.0	3
CGCCTTT	35	0.0012519866	40.0	22
GTTACTT	35	0.0012519866	40.0	46