SRR1780385_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780385_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	223734
Sequences flagged as poor quality	0
Sequence length	50
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

No overrepresented sequences

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTTTGC	25	0.0023576291	35.172802	30
GCTCTAA	35	3.211452E-4	31.425373	1
GTCTATG	35	3.2325956E-4	31.390244	2
CGCGTGG	35	3.2325956E-4	31.390244	2
GCGACCT	30	0.0057191625	29.350058	34
GTGATTC	30	0.0057191625	29.350058	40
CGAGCAA	30	0.0057191625	29.350058	37
CGTCTAT	45	4.0576997E-5	29.33035	1
ACGTCGT	30	0.005756834	29.310669	30
AGCTCCA	55	4.915468E-6	28.015963	36
GACGACC	40	6.9268874E-4	27.558884	20
CAATCGG	40	6.9724466E-4	27.52801	22
GTACATT	40	6.9907395E-4	27.515676	38
GTGCTTC	40	6.9907395E-4	27.515676	37
CACCCAT	40	6.999901E-4	27.509516	11
ATGTATT	40	7.055076E-4	27.472607	29
CCGCCGA	65	5.79701E-7	27.128817	18
CAAGCTC	65	5.865568E-7	27.09236	34
CAATGTG	50	8.355425E-5	26.379602	32
GCTCCAT	60	9.6637505E-6	25.681301	37