Basic Statistics
Measure | Value |
---|---|
Filename | SRR1780371_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 105122 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 53 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTGACGCTGCCGACGAGACCCAATGTGTAGATCTCGGTG | 175 | 0.1664732406156656 | No Hit |
CTTATACACATCTGACGCTGCCGACGAGAACGGCTGTGTAGATCTCGGTG | 138 | 0.13127604117121058 | No Hit |
CTTATACACATCTGACGCTGCCGACGAAGTATGCAGTGTAGATCTCGGTG | 106 | 0.1008352200300603 | No Hit |
TCTCTTATACACATCTGACGCTGCCGACGAGAACGGCTGTGTAGATCTCG | 106 | 0.1008352200300603 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGAATG | 20 | 7.8141765E-4 | 44.010963 | 30 |
CTTTACA | 135 | 0.0 | 39.158188 | 1 |
TTTACAC | 160 | 0.0 | 35.69086 | 2 |
TTTAAAT | 25 | 0.0023621714 | 35.14177 | 44 |
AATTAGA | 25 | 0.0023621714 | 35.14177 | 2 |
CTTATAC | 765 | 0.0 | 32.535843 | 1 |
TTATACA | 810 | 0.0 | 32.267517 | 2 |
TATACAC | 855 | 0.0 | 31.853651 | 3 |
TTACACA | 185 | 0.0 | 30.867773 | 3 |
CGGTGGT | 140 | 0.0 | 29.821938 | 43 |
TTATAGA | 30 | 0.0057679648 | 29.28481 | 2 |
ACCGTGC | 30 | 0.0057679648 | 29.28481 | 8 |
ATAATTA | 45 | 4.0805404E-5 | 29.284807 | 3 |
TTTATAC | 55 | 4.9683003E-6 | 27.95368 | 3 |
TCTTTAT | 50 | 8.202897E-5 | 26.431774 | 1 |
CGAAACT | 100 | 5.820766E-11 | 26.419168 | 25 |
ATATCTC | 50 | 8.256364E-5 | 26.406576 | 40 |
TAATAAG | 60 | 9.552972E-6 | 25.697557 | 1 |
TCGGAGT | 70 | 1.118091E-6 | 25.137138 | 31 |
GGTGGTC | 140 | 0.0 | 25.101261 | 44 |