FastQCFastQC Report
Wed 25 May 2016
SRR1780370_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1780370_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23100
Sequences flagged as poor quality0
Sequence length76
%GC46

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGCTGT150.002198950269.9870135
CCCGCCA200.006871581552.4902653
TCGCCGT200.006871581552.4902653
CGAATTG200.006871581552.4902625
GACGAAT200.006871581552.4902623
GAGAGGA200.006871581552.4902623
ACGAATT200.006871581552.4902624
TTTACAC305.7652E-446.6580052
CTTTACA350.001154522640.5187951
CGACGAA450.004226309231.10533722
TGTAGAT500.00707373427.99480638
Produced by FastQC (version 0.11.5)