SRR1780352_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780352_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	152805
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	3692	2.416151303949478	No Hit
CACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTTCTG	1821	1.1917149307941495	TruSeq Adapter, Index 2 (95% over 24bp)
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	924	0.6046922548345931	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	876	0.5732796701678611	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	309	0.20221851379208797	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	214	0.14004777330584733	TruSeq Adapter, Index 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCATA	20	0.006940563	52.500004	40
TTAATAC	20	0.006940563	52.500004	3
GTCTCTC	20	0.006940563	52.500004	67
GAGAAAC	20	0.006940563	52.500004	19
CGCTAAT	20	0.006940563	52.500004	48
AAGGCAT	20	0.006940563	52.500004	57
ATCGCAT	20	0.006940563	52.500004	39
GTGCTAA	30	5.863326E-4	46.666664	1
CTAATGG	30	5.863326E-4	46.666664	4
CGAATTC	35	0.0012523554	40.0	41
TCTTTAT	80	6.1907485E-8	35.000004	1
CTTTATA	90	4.454705E-9	35.000004	2
TAGAAGC	50	1.7035654E-4	35.0	59
AAGCCGG	60	1.2096694E-5	35.0	62
GCGTAAA	50	1.7035654E-4	35.0	68
GGCGTAA	55	2.9814086E-4	31.81818	67
GACAGAC	45	0.0042968923	31.111113	30
CTAACTT	45	0.0042968923	31.111113	21
TGACAGA	45	0.0042968923	31.111113	29
AAAATTG	45	0.0042968923	31.111113	61