SRR1780343_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780343_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	453534
Sequences flagged as poor quality	0
Sequence length	50
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCGT	22715	5.008444791349712	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCC	6776	1.4940445479280495	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCG	5719	1.2609859459268764	No Hit
CACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCGTCTTCTG	3463	0.7635590716462272	Illumina PCR Primer Index 1 (96% over 25bp)
TCTTTATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCC	1147	0.252902759219816	No Hit
ATACACATCTCCGAGCCCACGAGACTGGTCACAATCTCGTATGCCGTCTT	600	0.1322943814576195	Illumina PCR Primer Index 1 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTTGT	25	0.0023522016	35.19709	19
TATTAAG	25	0.0023522016	35.19709	15
AGCTAGT	25	0.0023522016	35.19709	6
ATGCCGT	3105	0.0	34.719154	44
TCTTCTG	450	0.0	34.223164	44
CGTCTTC	465	0.0	32.64606	42
TGATTCG	35	3.2141968E-4	31.429438	43
CCGTCTT	500	0.0	30.360838	41
GTCTTCT	500	0.0	30.360838	43
TCTTTAT	160	0.0	30.310993	1
CCTTATA	30	0.0056850263	29.392479	1
GCCTTAC	30	0.0056850263	29.392479	1
TGCTAGA	45	4.0085244E-5	29.392479	1
TGTTACG	30	0.005743598	29.33091	16
GCTAGTC	30	0.005743598	29.33091	7
TATGCCG	3745	0.0	28.78584	43
CTTTATA	175	0.0	27.654854	2
CTATAAC	40	7.02871E-4	27.497725	4
AAAAAGC	40	7.02871E-4	27.497725	15
GCTAGAA	45	0.0013975418	24.442421	2