SRR1780342_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780342_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	88869
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	6415	7.2184901371681915	No Hit
CACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTTCTG	2235	2.514937717314249	RNA PCR Primer, Index 47 (96% over 25bp)
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	1776	1.998447152550383	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	1684	1.894923989242593	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	431	0.48498351506149506	No Hit
ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT	295	0.33194927364997917	Illumina PCR Primer Index 9 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT	232	0.2610584118196447	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAACTCGTATGCCGT	183	0.20592107484049557	No Hit
CTTAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	103	0.11590093283372153	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	100	0.11252517750846751	No Hit
CTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	94	0.10577366685795948	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACTTGT	15	0.0022181359	70.0	16
TCTTTAT	35	2.9445982E-7	60.0	1
CTTTATA	45	1.6681624E-6	46.666664	2
ACTCGTA	40	4.5604946E-5	43.750004	38
AACTCGT	40	4.5604946E-5	43.750004	37
TAAGAAC	45	9.133527E-5	38.888885	33
CTACTCT	40	0.0024074786	35.000004	28
TCTGCTT	1590	0.0	34.339622	53
TTCTGCT	1595	0.0	34.231976	52
CCGTCTT	1585	0.0	34.227127	47
TCTTCTG	1590	0.0	34.119495	50
GTCTTCT	1590	0.0	34.119495	49
GTATGCC	1610	0.0	33.913044	42
CTTGAAA	1600	0.0	33.90625	57
GCTTGAA	1625	0.0	33.815384	56
TATGCCG	1615	0.0	33.808052	43
TCGTATG	1615	0.0	33.808052	40
TGCCGTC	1605	0.0	33.80062	45
CTGCTTG	1620	0.0	33.703705	54
CGTATGC	1620	0.0	33.703705	41