SRR1780338_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780338_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	85653
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTTCTG	1985	2.317490338925665	Illumina PCR Primer Index 10 (96% over 26bp)
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	1815	2.1190150957934923	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	459	0.5358831564568667	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	230	0.26852532894352793	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	224	0.2615203203623925	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	179	0.20898275600387609	Illumina PCR Primer Index 10 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAATAC	15	0.0022178618	70.0	3
CAATTCC	15	0.0022178618	70.0	70
ACGATCT	15	0.0022178618	70.0	61
CTTAATA	25	2.378522E-4	55.999996	2
CTATGGG	20	0.0069302004	52.5	6
CAGAACA	20	0.0069302004	52.5	51
TCGATTA	20	0.0069302004	52.5	44
ACAGGCT	20	0.0069302004	52.5	55
GTTGTCA	20	0.0069302004	52.5	22
ATCGATT	20	0.0069302004	52.5	43
TCTGCAA	30	5.848813E-4	46.666664	32
TGCAAAA	30	5.848813E-4	46.666664	59
GTTGATC	35	0.0012492745	40.0	29
TTGATCG	35	0.0012492745	40.0	30
GCAAGAG	35	0.0012492745	40.0	14
TATGGGT	35	0.0012492745	40.0	7
GCTGAGC	35	0.0012492745	40.0	9
TGTTGTC	35	0.0012492745	40.0	21
CAAGGTT	35	0.0012492745	40.0	36
GTGAGGT	35	0.0012492745	40.0	24