SRR1780336_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780336_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	117872
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

No overrepresented sequences

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACAGTA	15	0.0022199396	70.0	61
CTGACTT	20	0.0069366423	52.500004	19
ATCCATG	20	0.0069366423	52.500004	55
GAAAAGA	20	0.0069366423	52.500004	34
TGAATCC	20	0.0069366423	52.500004	45
TGCCGCT	60	2.573397E-7	40.833332	13
CTTTTCG	35	0.0012511894	40.0	36
GGACTTT	35	0.0012511894	40.0	33
TGGGAAA	35	0.0012511894	40.0	28
TCTGCCG	90	4.436515E-9	35.000004	11
TTTGTTA	40	0.002410663	35.000004	16
TTCCGAC	80	6.170194E-8	35.000004	19
TTCCAAA	40	0.002410663	35.000004	11
CGAAGCG	40	0.002410663	35.000004	46
GCCGTAT	60	1.207324E-5	35.0	54
CTTCCGA	95	7.521521E-9	33.157894	18
CGACGAT	55	2.9772957E-4	31.818184	22
ACGATGG	55	2.9772957E-4	31.818184	24
AGGGTTC	45	0.00429294	31.111113	15
GACTTTT	45	0.00429294	31.111113	34