SRR1780336_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780336_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	117872
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	10339	8.771379123116601	No Hit
CACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTTCTG	2727	2.3135265372607576	RNA PCR Primer, Index 34 (96% over 25bp)
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	2627	2.2286887471155152	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	2455	2.0827677480656983	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	747	0.6337382923849599	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	484	0.4106149043029727	RNA PCR Primer, Index 24 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT	312	0.26469390525315595	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCGT	242	0.20530745215148635	No Hit
CTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	172	0.14592099904981676	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	168	0.14252748744400706	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	165	0.1399823537396498	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATATCGTATGCCGT	123	0.10435048187864802	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTTAT	65	3.6379788E-12	53.846153	1
CTTTATA	70	7.2759576E-12	50.0	2
CTTATAT	30	5.857832E-4	46.666664	1
AACTCGT	60	2.573397E-7	40.833332	37
CAACTCG	60	2.573397E-7	40.833332	36
ATATACA	35	0.0012511894	40.0	4
GTTATGA	35	0.0012511894	40.0	2
AATAACA	35	0.0012511894	40.0	69
TTTATAC	90	1.03682396E-10	38.88889	3
TTAATAC	40	0.002410663	35.000004	2
TGGCTTG	40	0.002410663	35.000004	57
ATACCTT	40	0.002410663	35.000004	22
CTTAATA	50	1.7012036E-4	35.0	1
CCGTCTT	2405	0.0	34.636173	47
TATGCCG	2480	0.0	34.435482	43
TCGTATG	2460	0.0	34.430893	40
GCCGTCT	2440	0.0	34.42623	46
CTTGAAA	2390	0.0	34.414227	57
CGTATGC	2485	0.0	34.3662	41
TGCCGTC	2485	0.0	34.3662	45