SRR1780333_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780333_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	404145
Sequences flagged as poor quality	0
Sequence length	50
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

No overrepresented sequences

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAAAACG	45	1.0436124E-6	34.185745	1
AAAACGG	55	1.3827594E-7	31.96589	2
CATCGTT	35	3.2272274E-4	31.406733	32
ATACTTT	30	0.0057531106	29.32021	27
TACACAG	30	0.005774033	29.29844	5
ATACTGG	45	0.0014063225	24.415367	6
CAGTGTA	55	1.5812035E-4	24.021982	34
GCCTAAG	50	0.0025897766	21.98199	33
TCTACGT	50	0.0025935024	21.976551	2
GCATGTA	70	3.235046E-5	21.976551	2
GTATTTC	55	0.0044580563	20.015837	39
GATCCTA	55	0.00450626	19.978682	1
GTATATG	55	0.00450626	19.978682	1
AGCATAT	55	0.0045094886	19.97621	5
AAACGGG	90	1.0085001E-5	19.534712	3
GCAGTGT	70	8.155319E-4	18.841707	33
TCTTTAT	70	8.1689056E-4	18.837044	1
TCGTTGT	60	0.007364767	18.350124	34
TTTCAAC	60	0.0074441433	18.316057	42
CTACGTC	60	0.0074494598	18.313791	3