SRR1780333_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780333_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	404145
Sequences flagged as poor quality	0
Sequence length	50
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGT	25854	6.397208922540178	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCC	7620	1.8854619010503657	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCG	6243	1.5447426047581931	No Hit
CACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGTCTTCTG	4408	1.090697645646983	Illumina PCR Primer Index 2 (95% over 24bp)
TCTTTATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCC	1383	0.3422039119622908	No Hit
ATACACATCTCCGAGCCCACGAGACCCGTTTGTATCTCGTATGCCGTCTT	710	0.17567952096401043	Illumina PCR Primer Index 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCTTCT	535	0.0	36.603996	43
TCAAGAC	25	0.002350524	35.201286	3
GTATCGG	25	0.0023519516	35.196934	14
TCTTCTG	565	0.0	34.660423	44
CGTCTTC	570	0.0	34.352135	42
ATGCCGT	3375	0.0	33.901733	44
TCTTTAT	155	0.0	32.707066	1
CTTTATA	155	0.0	32.646355	2
TGCAAGG	35	3.2157454E-4	31.42583	31
CCGTCTT	665	0.0	29.444685	41
TCCTATA	45	4.0619074E-5	29.334406	2
CTACTGC	30	0.005742993	29.330774	8
TATGCCG	3995	0.0	28.860695	43
GCCGTCT	710	0.0	27.888344	40
TCTGCAA	40	7.0275593E-4	27.4976	29
GGCTATA	40	7.0275593E-4	27.4976	30
TTTATAC	225	0.0	26.400967	3
TATGGGT	45	0.0013963078	24.44534	4
CAAGGTT	45	0.0013973151	24.442314	33
TTAATAC	75	2.0579573E-6	23.467525	3