SRR1780331_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780331_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	781155
Sequences flagged as poor quality	0
Sequence length	50
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCGT	21852	2.797396163373466	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCC	7125	0.9121109126869827	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCG	5422	0.6941004026089572	No Hit
CACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCCGTCTTCTG	4170	0.5338249131094341	TruSeq Adapter, Index 9 (96% over 26bp)
TCTTTATACACATCTCCGAGCCCACGAGACTGGATCTGATCTCGTATGCC	1152	0.14747393283023216	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGGATCTGATATCGTATGCCGT	834	0.10676498262188683	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTCTT	610	0.0	36.42681	41
CGTATGG	25	0.0023506233	35.20507	2
TCTTCTG	640	0.0	35.06306	44
CGTCTTC	660	0.0	33.667206	42
CTTTATA	185	0.0	33.302094	2
GTCTTCT	680	0.0	32.676994	43
TCTTTAT	205	0.0	31.184334	1
ATGCCGT	3165	0.0	31.1411	44
CCTTATA	30	0.0056878426	29.392132	1
TATCTAG	30	0.0057433345	29.333803	5
GATAATT	30	0.0057469294	29.330048	11
GCCGTCT	785	0.0	28.866703	40
TATGCCG	3645	0.0	27.040213	43
TTATCGG	50	8.3368126E-5	26.400421	25
TATCGGA	50	8.340445E-5	26.398733	26
ATTAGAG	45	0.0013965986	24.447966	3
ATCGATA	45	0.0013976409	24.444836	23
TTTAGCG	45	0.0013981623	24.443272	26
CATCGTT	45	0.0013986838	24.441706	32
TTAATAC	55	1.591359E-4	24.003456	2