SRR1780329_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780329_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	557407
Sequences flagged as poor quality	0
Sequence length	50
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGCGTCGAATCTCGTATGCCGT	20108	3.6074179190429976	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGCGTCGAATCTCGTATGCC	5185	0.9302000154285827	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGCGTCGAATCTCGTATGCCG	4984	0.8941401884081112	No Hit
CACATCTCCGAGCCCACGAGACGGCGTCGAATCTCGTATGCCGTCTTCTG	3866	0.693568613239518	RNA PCR Primer, Index 13 (96% over 25bp)
TCTTTATACACATCTCCGAGCCCACGAGACGGCGTCGAATCTCGTATGCC	1279	0.2294553172098664	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTCTG	515	0.0	35.453636	44
GTCTTCT	550	0.0	33.197495	43
TCTTTAT	190	0.0	32.48563	1
CTTTATA	190	0.0	32.421516	2
ATGCCGT	2795	0.0	32.26948	44
AGACTAT	35	3.2170775E-4	31.426203	6
CCGTCTT	610	0.0	29.932167	41
CGTCTTC	635	0.0	29.100166	42
AATATCG	70	3.5861376E-8	28.283583	36
TTTAGCC	55	4.9576647E-6	27.997887	9
TATGCCG	3265	0.0	27.624258	43
TAAATGT	40	7.026761E-4	27.500391	25
AAATGTC	40	7.026761E-4	27.500391	26
TCGTTTA	40	7.030447E-4	27.497927	32
CGTTTAT	40	7.030447E-4	27.497927	33
GCCGTCT	685	0.0	27.29721	40
ATCGTAT	65	5.925467E-7	27.07488	39
ATATCGT	65	5.925467E-7	27.07488	37
TTTATAC	275	0.0	24.800354	3
CTGTTTT	45	0.0013971536	24.444794	25