SRR1780324_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780324_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	156827
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	9835	6.271241559170296	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	3109	1.982439248343716	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	2383	1.5195087580582425	No Hit
CACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTTCTG	2084	1.3288528123346106	Illumina PCR Primer Index 9 (96% over 25bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	653	0.416382383135557	No Hit
ATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTT	368	0.23465347165985448	Illumina PCR Primer Index 9 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGACCTCGTATGCCGT	333	0.21233588604003137	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGAACTCGTATGCCGT	173	0.11031263749226854	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGTCGC	25	2.3846529E-4	55.999996	32
TCTTTAT	105	0.0	53.333332	1
ACAACGC	20	0.006940901	52.500004	8
CCATAGG	20	0.006940901	52.500004	1
GGTATCT	20	0.006940901	52.500004	35
GTATCTT	20	0.006940901	52.500004	36
CTTTATA	125	0.0	44.8	2
ACTCGTA	60	2.5806912E-7	40.833332	38
TTGTGAT	35	0.0012524554	40.000004	45
TAAGGAA	35	0.0012524554	40.000004	16
CTTGAAA	2315	0.0	36.738663	57
CCGTCTT	2385	0.0	36.39413	47
TTGAAAA	2330	0.0	36.351933	58
CGTATGC	2410	0.0	36.307056	41
TATGCCG	2410	0.0	36.307056	43
TCGTATG	2405	0.0	36.237007	40
CTCGTAT	2390	0.0	36.171547	39
TGAAAAA	2335	0.0	36.1242	59
ATCTCGT	2225	0.0	36.02247	37
TCTTCTG	2400	0.0	36.020832	50