SRR1780320_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780320_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	152372
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT	9340	6.129735121938413	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	2963	1.9445829942509123	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG	2276	1.493712755624393	No Hit
CACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTTCTG	2124	1.3939568949675794	Illumina PCR Primer Index 8 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	553	0.3629275719948547	No Hit
ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT	279	0.18310450738980916	RNA PCR Primer, Index 15 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAACCTCGTATGCCGT	245	0.16079069645341665	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTATCT	15	0.002221192	70.0	33
TGTCATC	25	2.384437E-4	55.999996	54
GCCATAG	25	2.384437E-4	55.999996	1
CTTTATA	50	9.731593E-10	55.999996	2
AGATAAT	20	0.006940526	52.5	32
TTGAACG	20	0.006940526	52.5	4
AGTTATC	20	0.006940526	52.5	32
TATGTCA	20	0.006940526	52.5	52
TTAATAC	35	2.0788782E-5	50.0	3
GTCTGAT	30	5.863271E-4	46.666664	25
GTAGCAG	30	5.863271E-4	46.666664	55
TCTTTAT	80	2.910383E-11	43.75	1
CTTAATA	50	3.4609766E-6	42.0	2
ATCGTAT	35	0.0012523439	40.0	39
TATCTTC	35	0.0012523439	40.0	66
TTCTTGT	35	0.0012523439	40.0	12
CCATAGA	35	0.0012523439	40.0	2
CCCCAGT	35	0.0012523439	40.0	17
TCTTTCA	35	0.0012523439	40.0	10
ATAACAT	35	0.0012523439	40.0	31