SRR1780314_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780314_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	147003
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	10100	6.870608082828242	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	2682	1.8244525621926084	No Hit
CACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTTCTG	1745	1.1870506044094338	Illumina PCR Primer Index 10 (96% over 26bp)
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	1120	0.76188921314531	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	392	0.26666122460085845	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	343	0.23332857152575118	Illumina PCR Primer Index 10 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTACCTCGTATGCCGT	247	0.16802378182758176	No Hit
CTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	154	0.10475976680748011	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCT	15	0.0022210358	70.00001	63
TAACTCG	15	0.0022210358	70.00001	36
ACTCGTA	25	2.3841597E-4	56.000004	38
TCCCGTA	25	2.3841597E-4	56.000004	12
GGACACC	25	2.3841597E-4	56.000004	19
CTGTAGG	20	0.006940042	52.5	2
CAATGTA	20	0.006940042	52.5	45
TGGACAG	35	0.0012522003	40.0	32
AACTCGT	35	0.0012522003	40.0	37
CCGTCTT	1790	0.0	36.173187	47
GCCGTCT	1805	0.0	36.06648	46
GTCTTCT	1805	0.0	35.872574	49
CGTATGC	1825	0.0	35.863014	41
TATGCCG	1825	0.0	35.863014	43
TCGTATG	1825	0.0	35.863014	40
TCTTCTG	1800	0.0	35.77778	50
TCTCGTA	1765	0.0	35.69405	38
CTTGAAA	1805	0.0	35.67867	57
CTCGTAT	1815	0.0	35.67493	39
CGTCTTC	1815	0.0	35.67493	48