SRR1780306_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780306_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	85050
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	8502	9.99647266313933	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	2281	2.681951793062904	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	1997	2.3480305702527926	No Hit
CACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTTCTG	1679	1.9741328630217518	RNA PCR Primer, Index 15 (96% over 25bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	522	0.6137566137566138	No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	297	0.3492063492063492	RNA PCR Primer, Index 48 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCGT	206	0.24221046443268665	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	131	0.1540270429159318	No Hit
CTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	116	0.13639035861258084	No Hit
CTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	116	0.13639035861258084	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATATCGTATGCCGT	101	0.11875367430922987	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAAACTCGTATGCCGT	96	0.1128747795414462	No Hit
CAGCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGC	96	0.1128747795414462	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGCGAC	15	0.0022178078	70.00001	38
CATAATT	15	0.0022178078	70.00001	61
AACAAGA	20	0.006930035	52.5	70
GAGTGGC	20	0.006930035	52.5	31
CTCCGCT	20	0.006930035	52.5	32
CATTCTA	20	0.006930035	52.5	35
GCTTATA	20	0.006930035	52.5	3
GAATTCT	20	0.006930035	52.5	33
AATATCG	30	5.848579E-4	46.666668	36
TCTTTAT	75	1.4551915E-11	46.666664	1
CTTTATA	80	2.910383E-11	43.75	2
TTTATAC	90	1.8189894E-12	42.777775	3
ATCGTAT	35	0.0012492249	40.0	39
ATATCGT	35	0.0012492249	40.0	37
GTCAATA	35	0.0012492249	40.0	33
CTTAATA	55	6.62638E-6	38.18182	1
TATGCCG	1775	0.0	33.915493	43
ATCTCGT	1685	0.0	33.857567	37
AATCTCG	1665	0.0	33.843845	36
GTATGCC	1780	0.0	33.820225	42