SRR1780302_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780302_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	145822
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	5842	4.006254200326426	No Hit
CACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTTCTG	1745	1.196664426492573	RNA PCR Primer, Index 23 (95% over 24bp)
TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	1528	1.04785286170811	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	1511	1.0361948128540275	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	424	0.2907654537724074	No Hit
ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT	198	0.13578198077107706	RNA PCR Primer, Index 47 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCGT	186	0.1275527698152542	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGTAC	15	0.0022209994	70.0	3
GCATGTA	15	0.0022209994	70.0	2
TTAATAC	25	2.3840954E-4	55.999996	3
GATGTTA	20	0.006939931	52.5	33
CGTATGG	20	0.006939931	52.5	44
CCGTATG	20	0.006939931	52.5	43
ACAGCAT	20	0.006939931	52.5	65
ATACTAT	35	2.0784333E-5	50.0	27
GGCACAC	35	0.0012521665	40.0	12
CTAAAAT	35	0.0012521665	40.0	63
TGCCTAC	35	0.0012521665	40.0	45
ACGGTTT	35	0.0012521665	40.0	7
CTTTATA	95	1.8553692E-10	36.842106	2
CGTGCGA	40	0.0024125353	35.0	12
TCTTCGT	40	0.0024125353	35.0	20
GACAAAC	40	0.0024125353	35.0	52
AGACGGT	40	0.0024125353	35.0	5
TACGACA	40	0.0024125353	35.0	49
GACGGTT	40	0.0024125353	35.0	6
TCTTTAT	100	3.2196112E-10	35.0	1