SRR1780299_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780299_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	363125
Sequences flagged as poor quality	0
Sequence length	50
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGCGGACAATCTCGTATGCCGT	20332	5.599173838209983	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGCGGACAATCTCGTATGCC	6234	1.716764199655766	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGCGGACAATCTCGTATGCCG	5111	1.4075043029259897	No Hit
CACATCTCCGAGCCCACGAGACCGCGGACAATCTCGTATGCCGTCTTCTG	3774	1.0393115318416524	RNA PCR Primer, Index 36 (95% over 24bp)
TCTTTATACACATCTCCGAGCCCACGAGACCGCGGACAATCTCGTATGCC	1140	0.31394148020654045	No Hit
ATACACATCTCCGAGCCCACGAGACCGCGGACAATCTCGTATGCCGTCTT	488	0.13438898450946643	RNA PCR Primer, Index 15 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTTAT	130	0.0	39.012333	1
CTTTATA	135	0.0	37.479485	2
TATGGCG	25	0.002351246	35.198128	5
TCTTCTG	485	0.0	34.472393	44
ATGCCGT	2780	0.0	33.6313	44
GTCTTCT	505	0.0	33.10715	43
TTTATAC	175	0.0	32.683975	3
GAGTATA	35	3.1705748E-4	31.50064	1
TTTGCAA	35	3.214467E-4	31.426897	40
CGTCTTC	550	0.0	30.398382	42
CCGTCTT	560	0.0	29.855553	41
TGGAATA	30	0.005741281	29.331776	38
GGCAAAA	30	0.005741281	29.331776	38
TCCTATA	30	0.005741281	29.331776	2
ATCCATA	30	0.005741281	29.331776	18
GGACCAA	30	0.005741281	29.331776	13
TAGTTGC	45	4.063273E-5	29.331774	21
TATGCCG	3335	0.0	27.968527	43
ATAATGC	40	7.024781E-4	27.498537	38
GGATAAT	40	7.024781E-4	27.498537	36