SRR1780298_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780298_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	176165
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	9492	5.388130445888797	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	2523	1.4321800584679136	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	2326	1.3203530780802089	No Hit
CACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTTCTG	1821	1.033690006527971	RNA PCR Primer, Index 32 (96% over 26bp)
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	622	0.3530780802088951	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	324	0.18391848551074277	RNA PCR Primer, Index 42 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT	279	0.1583742514120285	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGTAAG	15	0.0022217694	70.00001	1
CTTAATA	45	2.6861017E-8	54.444443	2
CTCACTA	20	0.0069423188	52.499996	15
TTAATAC	40	7.4478885E-7	52.499996	3
TAAGTCC	20	0.0069423188	52.499996	4
CGATTAT	20	0.0069423188	52.499996	16
CGACAAC	20	0.0069423188	52.499996	14
GGCCAAT	20	0.0069423188	52.499996	30
GTAAGTC	20	0.0069423188	52.499996	3
TTTCTCG	20	0.0069423188	52.499996	39
TCTTTAT	100	0.0	42.0	1
CGTAGGA	35	0.0012528766	40.000004	2
ATAAGAG	55	6.666978E-6	38.181816	3
TAATACA	65	4.83893E-7	37.69231	4
TATGCCG	2000	0.0	35.7	43
TCGTATG	1995	0.0	35.614037	40
CGTATGC	2005	0.0	35.610973	41
CTCGTAT	1970	0.0	35.532993	39
CCGTCTT	2005	0.0	35.43641	47
GTATGCC	2015	0.0	35.434242	42