SRR1780296_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780296_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	143037
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT	9311	6.509504533791956	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	3001	2.0980585442927353	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG	2304	1.6107720380041528	No Hit
CACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTTCTG	2219	1.5513468543104232	Illumina PCR Primer Index 8 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	635	0.44394107818256817	No Hit
ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT	330	0.23070953669330313	RNA PCR Primer, Index 15 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAACCTCGTATGCCGT	214	0.14961163894656626	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGCAAA	20	7.904938E-5	70.0	10
TTCGTTC	15	0.002220912	70.0	22
CAAAGGT	20	7.904938E-5	70.0	13
CTTTATA	95	0.0	58.947365	2
TAACCGT	25	2.3839394E-4	56.000004	5
CACTTGT	25	2.3839394E-4	56.000004	28
TCTTTAT	100	0.0	52.500004	1
CTTCCGG	20	0.006939658	52.5	15
AGACCCG	20	0.006939658	52.5	5
AACCGTG	30	5.862055E-4	46.666664	6
AAACAAG	30	5.862055E-4	46.666664	18
CTTAATA	70	1.9081199E-8	40.0	1
ATAGGGA	35	0.001252086	40.0	42
CATGACT	35	0.001252086	40.0	29
ACCTGAA	35	0.001252086	40.0	13
TGAAACA	35	0.001252086	40.0	16
CTGAAAC	35	0.001252086	40.0	15
GAAACAA	35	0.001252086	40.0	17
GTTCCTT	35	0.001252086	40.0	33
TCACTTG	35	0.001252086	40.0	27