SRR1780293_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780293_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	376373
Sequences flagged as poor quality	0
Sequence length	50
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCGT	19729	5.241874417134067	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCC	5666	1.5054214834751696	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCG	5174	1.374700098041039	No Hit
CACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCGTCTTCTG	3095	0.8223225364199875	RNA PCR Primer, Index 14 (96% over 25bp)
TCTTTATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCC	1143	0.3036880966488032	No Hit
ATACACATCTCCGAGCCCACGAGACTGGGTTTCATCTCGTATGCCGTCTT	457	0.12142209988495456	RNA PCR Primer, Index 35 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTTAT	170	0.0	37.61676	1
TTCTGTT	30	1.2999635E-4	36.66412	38
TCTTCTG	360	0.0	36.05305	44
CTTATAT	25	0.0023240768	35.28193	1
GATGTAT	25	0.0023515425	35.197556	24
TGAAGTT	25	0.0023515425	35.197556	39
GAAGTGT	25	0.0023515425	35.197556	37
ATAAATC	25	0.0023515425	35.197556	38
ATGCCGT	2475	0.0	34.753143	44
GCTTATA	40	1.8159713E-5	33.002094	3
CGTCTTC	395	0.0	32.85848	42
GTCTTCT	395	0.0	32.85848	43
CCGTCTT	400	0.0	32.447746	41
CTTTATA	200	0.0	31.902021	2
ACTCGCA	35	3.214994E-4	31.426392	21
TTTATAC	250	0.0	29.921896	3
ATGTAGG	30	0.005738273	29.335196	3
CATTAGT	30	0.0057420004	29.331297	13
ACGATTC	30	0.0057420004	29.331297	14
TCTGTTG	30	0.0057420004	29.331297	39