SRR1780292_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780292_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	167918
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	8313	4.9506306649674245	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	2301	1.3703116997582154	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	2266	1.3494681928083947	No Hit
CACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTTCTG	1829	1.0892221203206327	RNA PCR Primer, Index 18 (95% over 24bp)
TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	543	0.323372122107219	No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGT	317	0.18878262008837646	No Hit
ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT	262	0.15602853773865816	RNA PCR Primer, Index 30 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT	201	0.11970128276897057	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACCAGA	15	0.002221588	70.0	25
CTTTATA	75	0.0	60.666668	2
TTAATAC	45	2.6850103E-8	54.444443	3
GTACAAG	40	7.4457785E-7	52.5	1
CGACATA	20	0.0069417534	52.5	31
GATAGTC	20	0.0069417534	52.5	52
TACCGGC	20	0.0069417534	52.5	56
TCTTTAT	100	0.0	45.499996	1
CTTAATA	60	2.5821464E-7	40.833332	2
GCTCTAA	40	0.0024135737	35.0	1
GTCACTC	40	0.0024135737	35.0	8
CAAGGAA	60	1.2103814E-5	35.0	4
TATGCCG	1765	0.0	32.521248	43
CGTATGC	1770	0.0	32.42938	41
TCGTATG	1770	0.0	32.42938	40
CTTGAAA	1740	0.0	32.385056	57
GTATGCC	1775	0.0	32.338028	42
CTCGTAT	1755	0.0	32.30769	39
CCGTCTT	1760	0.0	32.21591	47
CGTCTTC	1765	0.0	32.124645	48