SRR1780290_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780290_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	136383
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	9077	6.655521582601938	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	2930	2.1483615993195633	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	2400	1.7597501154836013	No Hit
CACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTTCTG	2070	1.517784474604606	Illumina PCR Primer Index 10 (96% over 26bp)
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	587	0.43040554907869744	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	299	0.21923553522066533	Illumina PCR Primer Index 10 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTACCTCGTATGCCGT	176	0.12904834180213076	No Hit
CTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	147	0.10778469457337059	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGAA	15	0.0022206898	70.0	33
GTATCTT	15	0.0022206898	70.0	43
TAACTCG	15	0.0022206898	70.0	36
CTTTATA	100	0.0	55.999996	2
ACCCTTT	20	0.0069389683	52.5	10
TCTTTAT	110	0.0	50.90909	1
TTTATAC	145	0.0	43.448277	3
GCACCAG	35	0.0012518811	40.0	5
TCAGATG	35	0.0012518811	40.0	4
TGTATAA	40	0.0024119876	35.0	11
GTGTATA	40	0.0024119876	35.0	10
ATCTTAC	40	0.0024119876	35.0	53
ATAGGGG	55	2.979735E-4	31.81818	3
CCTCGCG	45	0.0042952844	31.111109	26
GTCTTGT	45	0.0042952844	31.111109	1
CGTCAGA	45	0.0042952844	31.111109	2
AGTACTT	45	0.0042952844	31.111109	27
TATGCCG	2155	0.0	30.696054	43
TCGTATG	2180	0.0	30.665138	40
CTCGTAT	2170	0.0	30.64516	39