SRR1780280_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780280_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	120033
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	9124	7.601242991510667	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	2618	2.1810668732765155	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	2398	1.9977839427490773	No Hit
CACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTTCTG	2173	1.810335491073288	TruSeq Adapter, Index 2 (95% over 24bp)
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	570	0.4748694109119992	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	278	0.23160297584830838	TruSeq Adapter, Index 2 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTACCTCGTATGCCGT	249	0.20744295318787334	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTAACTCGTATGCCGT	181	0.1507918655703015	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	128	0.10663734139778228	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAACT	30	8.334635E-6	58.333332	34
TAACTCG	30	8.334635E-6	58.333332	36
AGTCATG	25	2.3823878E-4	56.000004	37
GTTGAAA	20	0.0069369497	52.5	70
ATAATAC	20	0.0069369497	52.5	4
TGTCTGA	20	0.0069369497	52.5	48
ACGTAAC	35	2.0762105E-5	50.0	33
CACGTAA	35	2.0762105E-5	50.0	32
GTAACTC	35	2.0762105E-5	50.0	35
TCTTTAT	75	1.4551915E-11	46.666668	1
CTTTATA	80	2.910383E-11	43.75	2
TTTATAC	100	7.2759576E-12	38.500004	3
ACTCGTA	55	6.6492194E-6	38.181816	38
AAACAAT	50	1.7013882E-4	35.000004	68
CTTGAAA	1985	0.0	34.735516	57
TCGTATG	2060	0.0	34.660194	40
CTCGTAT	2040	0.0	34.656864	39
GTATGCC	2055	0.0	34.574207	42
TATGCCG	2045	0.0	34.57213	43
CTGCTTG	2005	0.0	34.56359	54